LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g1748	ATGGCGCCGAAGCAGAGAACACCTAGGGTTAGCAGCAGGAACCCCGAATTGATCAGGGGAATCGGGAAATACTCCCGCTCCAAGATGTACCACAAGAAGGGTCTCTGGGCCATCAAGGCCAAGAACGGTGGCTCCTTACCCCGCCACGACCCCAGGCCTAAGCCCGACCCCGCCGCCCGGAAGTCCCCCAAGTTCTACCCTGCCGACGATGTCAAGATCCCCCTTCGCAACAAGCACAAGCCCAAACCCACCAAGCTCAGGGCTAGCATTACTCCTGGGACCGTGCTCATTCTTCTTGCCGGAAGATTTAAGGGAAAGAGGGTAGTGTTTCTCAAGCAGCTTCCTTCTGGATTGCTTCTTGTCACTGGTCCTTTCAAGATTAATGGAGTTCCTTTGAGACGTGTGAATCAGTCATATGTTATTGCCACATCAACCAAAGTAGATGTATCTGCAGTTAATGTGGAGAAATTTGATGACAAATACTTTTCAAAGGAGGTTCAGAAAAAGAAAAAGAAGGGAGAAGGAGAGTTCTTTGAAGCTGATAAGGAGGAGAAAAATGTGCTTCCCCAAGAGAAGAAGGATGACCAGAAGAGTGTGGATGCTGCTTTGATAAAAGCCATTGAGAGTGTTCCAGACTTGAAGTTTTACTTGGGCGCCAGGTTTTCCTTGAAGGCAGGCCAGAAGCCTCATGAGTTAGTCTTCTAA	705	0.4908	MAPKQRTPRVSSRNPELIRGIGKYSRSKMYHKKGLWAIKAKNGGSLPRHDPRPKPDPAARKSPKFYPADDVKIPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDVSAVNVEKFDDKYFSKEVQKKKKKGEGEFFEADKEEKNVLPQEKKDDQKSVDAALIKAIESVPDLKFYLGARFSLKAGQKPHELVF*	235

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g1748	234	Pfam	Ribosomal protein L6e	127	234	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Dod09g1748	234	MobiDBLite	consensus disorder prediction	1	25	-	-
	Dod09g1748	234	Pfam	Ribosomal protein L6, N-terminal domain	4	56	IPR005568	GO:0003735\|GO:0005840\|GO:0006412
	Dod09g1748	234	Gene3D	-	88	172	IPR014722	-
	Dod09g1748	234	PANTHER	60S RIBOSOMAL PROTEIN L6	1	234	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Dod09g1748	234	MobiDBLite	consensus disorder prediction	45	65	-	-
	Dod09g1748	234	ProSitePatterns	Ribosomal protein L6e signature.	128	146	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Dod09g1748	234	SUPERFAMILY	Translation proteins SH3-like domain	88	178	IPR008991	-
	Dod09g1748	234	CDD	KOW_RPL6	82	234	IPR041997	-
	Dod09g1748	234	PANTHER	60S RIBOSOMAL PROTEIN L6	1	234	-	-
	Dod09g1748	234	MobiDBLite	consensus disorder prediction	40	65	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g1748	Dod-Chr9	39163915	39165935	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g1748	1	234	Cytoplasmic Ribosomal Protein Gene Family	AT1G74050	77.778	4.54e-115	327

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g1748	K02934		-	gmx:100784101	395.201