Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1713 ATGGCTCTTCACCATCCCCACCGCCTATTGCTTGAGGCAGATTCAAGCTCAACAGCACCACCAGGTGATGTAAATAGGACAAGGGAGTCCTCTTTGGGTGACGCAAATTTTGACACCAACATGGTGATTATCTTGGCAGCACTGCTTTGTGCACTCATATGTGCTTTGGGGCTCAACTCAATTGTGCGCTGTGCTCTAAGATGTAGCCGCAGGTTGGCTTTTGAGACACCAGATGAGGCAGCAACTCGTTTAGCAGTTAAAGGGCTGAAGAAGAGTGCTTTGCATCAGATCCCTATAGTGGTTTATGGTTCAGGTAGTACAAGTATTGCAGCCACTGATTGTCCAATTTGCCTAGGGGAGTTTATGGATGGGGAGAAAGTTAGAGTGCTACCAAAATGTAACCATGGATTCCATGTAAGGTGCATAGATACATGGCTGCTCTCACACTCCTCTTGCCCTACTTGCAGACAATCTTTGCTTGAGCAACCATCCACTTCTGAAGTCCCAAGTTTAGCTGTTGCTGTAGCTGCAGCTTCAGGAACCAGGCATCATGCAGATAATGCCTTCGGGGGACATCAGCATGGGCATGTTGCGGTAGCTGTGGACGAGATTGGTTAA 618 0.479 MALHHPHRLLLEADSSSTAPPGDVNRTRESSLGDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRLAFETPDEAATRLAVKGLKKSALHQIPIVVYGSGSTSIAATDCPICLGEFMDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPTCRQSLLEQPSTSEVPSLAVAVAAASGTRHHADNAFGGHQHGHVAVAVDEIG* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1713 205 PANTHER RING-H2 FINGER PROTEIN ATL74 7 201 - -
Dod09g1713 205 Pfam Ring finger domain 113 156 IPR001841 -
Dod09g1713 205 SUPERFAMILY RING/U-box 113 168 - -
Dod09g1713 205 SMART ring_2 114 155 IPR001841 -
Dod09g1713 205 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 7 201 - -
Dod09g1713 205 SMART FANCL_C_2 110 160 - -
Dod09g1713 205 CDD RING-H2_PA-TM-RING 113 156 - -
Dod09g1713 205 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Dod09g1713 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 165 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1713 Dod-Chr9 38862264 38864301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1713 8 168 C3H Transcription Factor Family AT3G10910 61.047 9.02e-64 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1713 - K19040 gmx:100787273 296.975