Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1710 ATGGCGACTGCTCCGGACGCCGCGACCCCCCTGACGCCCGCAATTGGAGCGGCAACGGCAGCGCTGCCACTCCCAGCGGCGACGAATCCGACGGCGAAGATGACGAAGAGGAAGATGATGATGATGAGGAAGATGACGACGACGTTGAAGGGGATAACGATGTGGAAAGGCTCGTTGGTGTTGGTGACTGGGAACAAGCGCAATTCGAACGCAATTGGTGACATCAACGGTGGTGTCAGTGTTGCTAATGGGAAAGGACAGCACCACACCCCTTATGTTTCTAGTAGAGAGATGCTGGGGAAGGATGGTGATATTGGGCAGCTGGTGCATAATAATGCGAGTGGTACTGATGAAGATCATCATCATCATCATCAGAGAGAGAGATTGGGGAAGTGTCAGAGTGCTGTGACCATTACTGAAACTGACTGTGAGGAGTACTATTCCCGCTACCTTCAAGGCCCAGAAGGGTCTGCTTCTGTGCAGAAAGTTATGGTAGATGAGAATGGTTGTGGGTTTAGTGGGAGAAAGGATGTTCTATATTCAAGCGAGTCAGGGGAGTCATTGAGGAAAATTCTTTCGGATCCCGTTACGGGTGCTCTTATGGATGATGCCATGATATTACCTTGCGGACATTCATTTGGTGGAGGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGTACTTGTTCTCAACCCACATCTGAGGAATCAATATCTCCAAACCTATCACTTCGAGCTGCTGTGCAGGCATACCGGCGTGAAGAGGAGTCACAGTTTTACCGGTCATCCAAAAGAAGAAGAGAAAGATTTGATCAGGGTGGTTTTGGAGATTCAACTGTTATGGAACTACCAAGGGGTAGAGGTGTTCAATTTCCATTTGCTGTGATGGACAGGGTTGTCATAAAGGGGAACAAAAGGACACCACAACGCTTTGTTGGGCGTGAAGCTATTGTAACAACACAATGCCTGAATGGATGGTACGTGGTGAAGACATTGGACAATGCAGAGAGTGTGAAGTTGCAGTATCGCTCCCTTGCTAAGGTTTTGGATGATCCTTCAAAACCTGCAACCAGCAAGATGGGACCCAATTGGCGTTGA 1101 0.4841 MATAPDAATPLTPAIGAATAALPLPAATNPTAKMTKRKMMMMRKMTTTLKGITMWKGSLVLVTGNKRNSNAIGDINGGVSVANGKGQHHTPYVSSREMLGKDGDIGQLVHNNASGTDEDHHHHHQRERLGKCQSAVTITETDCEEYYSRYLQGPEGSASVQKVMVDENGCGFSGRKDVLYSSESGESLRKILSDPVTGALMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPTSEESISPNLSLRAAVQAYRREEESQFYRSSKRRRERFDQGGFGDSTVMELPRGRGVQFPFAVMDRVVIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDPSKPATSKMGPNWR* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1710 366 ProSiteProfiles U-box domain profile. 187 259 IPR003613 GO:0004842|GO:0016567
Dod09g1710 366 SUPERFAMILY RING/U-box 186 258 - -
Dod09g1710 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 257 IPR013083 -
Dod09g1710 366 Pfam U-box domain 192 257 IPR003613 GO:0004842|GO:0016567
Dod09g1710 366 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 67 365 - -
Dod09g1710 366 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 67 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1710 Dod-Chr9 38828863 38834250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1710 135 365 Plant U-box Gene Family AT5G05230 60.924 2.13e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1710 - - adu:107470194 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1710 09 38828863 38834250 Dod09g1710 09 38828863 38834250 ECH