Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1690 ATGGAATCATCCCCTTCCATTTCAGCTTCTCCTCCTTCTTCATCTTCATCTGTAAATAACAGCAACAACGAAACTATAAATACGAGTGATGTATCTTGGCGTGGCATGAACATCCCGTTCCGATTACGCTCCCCTCTTTCTATGATGTTGGAATACTCAGGCATCATGAGCTCAAACCCCGAAGATTCTTCTTCTTCTTCTTCTTCTTCACCTTCTCAATTGCGCCTTAGGCCTCAGCTTCACTCTCAATTTGCTTCTGGTTCCAGTTCTGGTTCTTCCGGCAGTGCCTGCAATGGAACTGGGGAAGTTGCAATACGCATAATTGGGGCTGGGGAGCAAGAGAACAATGGTGTGGGGTCAGGTTCTGCGTTTTCGCTGGCTTCCGTTTCGCCGCCGATTCAGATGTCGGAATTGGGGAGTCTGACCTGTGATGGGATGATCACTGTGAACAGGCCTAATGTGCCGCCGTTGAACTTGCGCGACCCGGAGGTTCGCCGGCGGGTTCTAGACGATGAGCCCCTCCGTGAGGTGCCTATGTCTGAGGTGTATGGGATGCTTGGCAGCGTCAGCGGTGGCGGTGGCGGCGGCGGCCGCAGGGACTCATCTTCCTCCTCCTCCTCCTCTGGCTACCAAAGGTATGATATTCAGCAGGCTGCTAAGTGGTTGGAGCAGATTCTCCCTTTCTCCCTCTTGTTACTGGTGGTCTTCATTCGCCAGCATTTGCAAGGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCTCTGAAGGGAGATCGTAGAGTCTCTGTTCTTGTTGGAATCTCTTTTGCCTTCATGCTGCACGTGATAGGCATTTACTGGTGGTATCTAAATGATGATCTTTTATACCCCCTGGCAATGCTCCCTCCAAAAGAAACACCACCTTTCTGGCATGCAATATTCATCATTCTGGTTAATGATACATTGGTGCGGCAAGCAGCAATGGCCTTCAAGTGTTTGCTGCTTATTTACTACAAAAATGGCAGAGGCCATAGCTTCCGCCGGCAGGGTCAAATCTTAACTCTGGTTGAGTACACTTTCCTGTTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGGTTTTTCTTGAACAAGGATTATGGAAGTCTCTTCTCGTCACTGACCACAGGGTTGTATTTAACTTTCAAACTAACAACTATAGTTGAGAAGGTCCAAAGCTTCATTGCTGCCTTAAAAGCATTATCAAAAAAGGAAGTTCATTATGGGGTTTATGCTACAATGGAACAGGTAAATGCTGCTGGTGACCTTTGCGCTATATGTCAGGAGAAGATGGATGGTCCTATTTTGTTGTCCTGTAAACACATGTTCTGTGAAGAATGTGTCTCTGAATGGTTTGAGCGAGAGAGGACTTGCCCATTATGCAGGGCAGTGGTCAAACCTGCTGATCTGCGGACCTTTGGAGATGGATCAACAAGTCTGCTTTTTCAGTTGTTTTAA 1515 0.4706 MESSPSISASPPSSSSSVNNSNNETINTSDVSWRGMNIPFRLRSPLSMMLEYSGIMSSNPEDSSSSSSSSPSQLRLRPQLHSQFASGSSSGSSGSACNGTGEVAIRIIGAGEQENNGVGSGSAFSLASVSPPIQMSELGSLTCDGMITVNRPNVPPLNLRDPEVRRRVLDDEPLREVPMSEVYGMLGSVSGGGGGGGRRDSSSSSSSSGYQRYDIQQAAKWLEQILPFSLLLLVVFIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRRVSVLVGISFAFMLHVIGIYWWYLNDDLLYPLAMLPPKETPPFWHAIFIILVNDTLVRQAAMAFKCLLLIYYKNGRGHSFRRQGQILTLVEYTFLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTTIVEKVQSFIAALKALSKKEVHYGVYATMEQVNAAGDLCAICQEKMDGPILLSCKHMFCEECVSEWFERERTCPLCRAVVKPADLRTFGDGSTSLLFQLF* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1690 504 SUPERFAMILY RING/U-box 434 486 - -
Dod09g1690 504 CDD RING-HC_RNFT1_like 442 481 - -
Dod09g1690 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 418 491 IPR013083 -
Dod09g1690 504 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 504 - -
Dod09g1690 504 Pfam Zinc finger, C3HC4 type (RING finger) 441 485 - -
Dod09g1690 504 MobiDBLite consensus disorder prediction 188 209 - -
Dod09g1690 504 SMART ring_2 443 480 IPR001841 -
Dod09g1690 504 MobiDBLite consensus disorder prediction 55 97 - -
Dod09g1690 504 ProSitePatterns Zinc finger RING-type signature. 458 467 IPR017907 -
Dod09g1690 504 ProSiteProfiles Zinc finger RING-type profile. 443 481 IPR001841 -
Dod09g1690 504 MobiDBLite consensus disorder prediction 1 29 - -
Dod09g1690 504 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 504 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1690 Dod-Chr9 38671501 38676122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1690 42 504 C3H Transcription Factor Family AT5G01960 59.408 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1690 - K22379 gmx:100784614 610.527