Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1679 ATGGAGACTCTGAAAGCTGCGATTCCCGAAGGCCTGAAGCGAATGATCGGAGAGAGCACCGTCGCTGATCTTCGCGCCACTTGTTCTTCTCTTCACACCTTCTTCCTTCACTTCGAGCCCTTTCACCAGTTGGTTACTGAATTGGCGGACCCGAAGTATGCTCTGTGCGGCAAGAGCAACGACGCTGCGCTGGAATCCAAGCAGCTCGGAAATCACTGCTTCTCCAAAGGAGATTATTCCAAGGCTTTGGATTGCTATACACAGGCATTGCGGAAGGCTCCCTTGCAGGCTGGTGATATGGAAAATAATCTGGTTGCAACATTGTATGTTAATCGAGCTGCTGTATTGCATAAAATGAGTCTTCTGCTGGAGTGTTTGCGAGACTGCACTCGTGCCCTTCAGATATGTCCAGGCTATGCAAAGGCATGGTACAGGAGAGGTAAGGCAAATGCTTCATTGGGAAATTATAAAGATGCAATCTGTGACCTAAATGTGGCTAAAAATGTGGAATCATCACTGAGTGGGAAGAGACAAATAGAAAATGAGCTGAAAAATACTTTAGACCAATGCAAGAGCAAAAGTACAGTCATACAGCACAAGGAGGACAGCTTGACCACAGTGGGTGAGGTGCCCCAAATAAAGTTACATTGTGTCACCATACCTGAGAAAGGAAGAGGCATGGTATCATCATGTGACATTTCACCAGGTTCTTTGGTCCATAGTGAAGAACCCTATGCTATGATAATATTAAAGCAATGCCGGGAGACTCATTGCCATTATTGCTTGAATGACCTACCTGCTGATAGAGTTCCCTGTAGATCCTGTTCAATACCACTGTATTGCTCCCAGCAATGCCAGATACAGGCTGGAGGGCAAATGTTCAGGATTTTCCCAGAAGTTCATGGCATTCTTGAACAGTTACCCAGTGATCTTGGAGAATATGCTGCCAAAGTTATTCAAGGCCATGATTCTGAACAAGAAATTGATGACATCACTGATCATAAACACGAATGCCAAGGTGTACATTGGTCTGCAGTATTGCCATCAGAGGTAGTTTTGGCTGGCCGAATACTGGCAAGGTTTTTGCCAAAGAGAACATCTGAAGATATTACACACTTTGTGGAAGGGCTGGAGCTTGCCCATTGTTATGAGTATATGCTTTCTGAAGGAAAATTGGATTCACATATATATGCCCTTGTGCTATTATATTGTCTTCAGCACTCTTGTGGCAGCTGTGTTTTCCATAGATGGAGTCTCTATCTCTCAGGTTTGTTTTGGAACAACATATACGTTGTCATAATTATTTCTCAAATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAAAAGATGTTCATGGACTATCGGATCCATTTGGGGAATTTTCATCCAGTGCATATTTAACTAGTAATGTGGAACAGGTCAGGGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCCAACCTAATGTTCATGCATATTTTCTTTCACGTACTCTCTTTATACGAACAACAAAAGTCATATCTGTCGGGTGTGAGCTGGAATTGTCTTATGGTCCACAGGTTGGGTTGTTGGATTGTAAAGATCGCCTTAATCTTCTCAAAGATGAGTACATGTTTCAGTGTCAGTGTACTGGTTGTTCAGAAGTCAATCTATCTGACATTGTCCTCAATGCTTTTCGTTGTGTCAATCCTACTTGTTCTGGTGCAGTGTTGGAAAGCAGAGTAGTTAACTGTGAAAAGCAGAAAATCAAGAAGCACTTAAGCAATTTAAAGGTAGACAAGCATGATGACATTTATAAAGTGCTCAACCAAAATGATGCCTCCCTCCATATTCAACCTGGATACTGTCTAAAATGTGGTTCTTACTGTGATTTGGAGTCTTCGCATGCTGAAGTTGATAAAACTTTAATATCCTTCAAAAGGTTGCAGAATGCGATACTGTCAAAAGGAATTTCAAATAAAACCATTACAGATGCTTTGAGATCTCTTCATTTGCTAAGATCAAATTTGCATGAATACAACAAGATTATTGCAGAGATGGAGGACAACCTTGCACAGGCCTTTTGTTTGGTGGGAGAACTACAATTATCTATGGACCATTGTAAAGCATCTATCCAGATTCTGGAGAAGCTATATGATCCTGATGATATCGTTATTGCTTATGAACTAGTGAAGCTTTCTTCCATCCAACTTTCCTTGGGTAATGTTACTGCTATGGATAGCATAAGTCGAATAGGTGACATCTTCTCATGTTATTATGGACGTCATGCAGACTTGGTCTTCCCATATCTTAAATATCTTAGGAGAGAAATTGGGCATTTTTCCATGAAGGGTCTCTCCAATTAA 2367 0.4115 METLKAAIPEGLKRMIGESTVADLRATCSSLHTFFLHFEPFHQLVTELADPKYALCGKSNDAALESKQLGNHCFSKGDYSKALDCYTQALRKAPLQAGDMENNLVATLYVNRAAVLHKMSLLLECLRDCTRALQICPGYAKAWYRRGKANASLGNYKDAICDLNVAKNVESSLSGKRQIENELKNTLDQCKSKSTVIQHKEDSLTTVGEVPQIKLHCVTIPEKGRGMVSSCDISPGSLVHSEEPYAMIILKQCRETHCHYCLNDLPADRVPCRSCSIPLYCSQQCQIQAGGQMFRIFPEVHGILEQLPSDLGEYAAKVIQGHDSEQEIDDITDHKHECQGVHWSAVLPSEVVLAGRILARFLPKRTSEDITHFVEGLELAHCYEYMLSEGKLDSHIYALVLLYCLQHSCGSCVFHRWSLYLSGLFWNNIYVVIIISQIKVNCMTVVRLKSKDVHGLSDPFGEFSSSAYLTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFLSRTLFIRTTKVISVGCELELSYGPQVGLLDCKDRLNLLKDEYMFQCQCTGCSEVNLSDIVLNAFRCVNPTCSGAVLESRVVNCEKQKIKKHLSNLKVDKHDDIYKVLNQNDASLHIQPGYCLKCGSYCDLESSHAEVDKTLISFKRLQNAILSKGISNKTITDALRSLHLLRSNLHEYNKIIAEMEDNLAQAFCLVGELQLSMDHCKASIQILEKLYDPDDIVIAYELVKLSSIQLSLGNVTAMDSISRIGDIFSCYYGRHADLVFPYLKYLRREIGHFSMKGLSN* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1679 788 Pfam SET domain 224 525 IPR001214 GO:0005515
Dod09g1679 788 SMART tpr_5 63 96 IPR019734 GO:0005515
Dod09g1679 788 SMART tpr_5 106 139 IPR019734 GO:0005515
Dod09g1679 788 SMART tpr_5 685 718 IPR019734 GO:0005515
Dod09g1679 788 SMART tpr_5 140 173 IPR019734 GO:0005515
Dod09g1679 788 SUPERFAMILY SET domain 213 555 IPR046341 -
Dod09g1679 788 ProSiteProfiles SET domain profile. 211 525 IPR001214 GO:0005515
Dod09g1679 788 Gene3D Tetratricopeptide repeat domain 38 203 IPR011990 GO:0005515
Dod09g1679 788 Gene3D Tetratricopeptide repeat domain 530 776 IPR011990 GO:0005515
Dod09g1679 788 Gene3D SET domain 435 524 IPR046341 -
Dod09g1679 788 Gene3D SET domain 226 409 IPR046341 -
Dod09g1679 788 Gene3D - 257 306 - -
Dod09g1679 788 Pfam Tetratricopeptide repeat 68 95 IPR019734 GO:0005515
Dod09g1679 788 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Dod09g1679 788 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 777 - -
Dod09g1679 788 Gene3D - 307 384 - -
Dod09g1679 788 SUPERFAMILY TPR-like 63 719 IPR011990 GO:0005515
Dod09g1679 788 Coils Coil 670 690 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dod09g1679 SET 8.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1679 K24634 - gmx:100783548 1165.98