Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1677 ATGGCTCCAGGACCACAAAAAGTAGTGCAAATGGTGGAACCCGTTGAAAATGGTGGTGAAGATGACCTGAAGAAGAACGTTGTCAGAGCTTTGCCATTTTTCAAGCTATTGAGCTATGCTGACATAGTTGACTGGATTCTAATGGGTTTCGGAGTTCTCGGTGCGACTGTGCATGGCATGGCTCTTCCTGTTGGGTACCTGTTGCTAGGAAAAGCTCTCAATGCTTTTGGGAACAATATAAATCGCCCTGACGAGATGGTTGTTCCGTTTGTGTGGTACATGGCAATCGCCACATTTCCTGCTGGAGTACTTGAGATTGGTTGTTGGATGTATACAAGTGAAAGGCAGTTATCGCGCCTAAGATTAGCATATCTAAAAGCAGTGCTTAGCCAAGAGATAGGAGCTTTTGATACAGAATTAACAAGTGGTAAAATCATCAGTGGAATAAGCAACCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGACAATATCACACATAAAAACAGTATATGCTTTTGTTGGAGAGAGTTCAGCAATCAAATCCTTTACAGAGAACATGGACAAACAGTACCTTATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGGATGTTTCAAACTGTGAGTTTCTGTTCTTGGGCTCTCATTGTATGGGTTGGAGCTGTTGTGGTCAGAGCTGGTAAAGCAAAGGGAGGATACATAATAGCTGCAGTGATGAGCATTCTCTTTGGTGCTATACCTCTCACTTATGCTGCACCAGACATGCAAGTATTCAACCAGGCAAAAGCTGCAGGATATGAGGTTTTCCAAGTGATCCAAAGAAAGCCTTTGATAAGTAATGAAACTAAAAAGAAGAAGCTTACCAAGGTTAAAGGTCATATTGAGCTGAGAGATGTTTACTTTTCCTACCCATCAAGGCCAGAGAAACCTATCCTTCAAGGACTGTCCTTGTCCATTCCAGCGGGAAAGACAGTAGCACTTGTTGGTAGCAGCGGTTGTGGAAAGAGCACTGTTATTTCCCTTGTCAGCAGATTTTATGACCCCTCTAAAGGAGAAATTTTTATTGATCGTCGCAATATAAAGGATCTTGATCTGAAGTTCCTGCGAAGTAATATAGGGGCTGTTTCCCAAGAACCATCACTCTTTGCAGGCACCATCAAGGATAACTTGAAAGTGGGAAAAATGGACGCTCATGATCAAGAGATACAAGAGGCAGCGGTGATGTCAAATGCACACTCTTTCATATCACAGCTGCCTAATCAATACTCAACAGAGGTAGGACAAAGGGGCGTCCAATTATCAGGAGGCCAAAAACAGAGAATTGCCATAGCCAGAGCCATTCTTAAAAGCCCTCCCATCCTTTTGCTTGATGAGGCCACCAGTGCCCTTGACACAGAATCAGAAAGGCTGGTTCAAGAGGCACTTGAGACAGCCATGCAGGGAAGGACTGTCATCTTGATTGCACACAGGCTCTCAACAGTTGTAAATGCAGATATGATAGCTGTAGTGGAGAATGGACAGGTTGTAGAGACAGGAACACACCAGAGTTTGCTAGACACAAGCAAATTCTACAGTACATTATTCAGCATGCAGAACCTTGAACCAGTTCCTGAATCAAGGTAA 1635 0.4361 MAPGPQKVVQMVEPVENGGEDDLKKNVVRALPFFKLLSYADIVDWILMGFGVLGATVHGMALPVGYLLLGKALNAFGNNINRPDEMVVPFVWYMAIATFPAGVLEIGCWMYTSERQLSRLRLAYLKAVLSQEIGAFDTELTSGKIISGISNHMSVIQDAIGEKTISHIKTVYAFVGESSAIKSFTENMDKQYLISKGEALVKGVGTGMFQTVSFCSWALIVWVGAVVVRAGKAKGGYIIAAVMSILFGAIPLTYAAPDMQVFNQAKAAGYEVFQVIQRKPLISNETKKKKLTKVKGHIELRDVYFSYPSRPEKPILQGLSLSIPAGKTVALVGSSGCGKSTVISLVSRFYDPSKGEIFIDRRNIKDLDLKFLRSNIGAVSQEPSLFAGTIKDNLKVGKMDAHDQEIQEAAVMSNAHSFISQLPNQYSTEVGQRGVQLSGGQKQRIAIARAILKSPPILLLDEATSALDTESERLVQEALETAMQGRTVILIAHRLSTVVNADMIAVVENGQVVETGTHQSLLDTSKFYSTLFSMQNLEPVPESR* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1677 544 Pfam ABC transporter 316 465 IPR003439 GO:0005524
Dod09g1677 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 289 535 IPR027417 -
Dod09g1677 544 Pfam ABC transporter transmembrane region 49 165 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod09g1677 544 CDD ABC_6TM_Pgp_ABCB1_D1_like 48 272 - -
Dod09g1677 544 Gene3D - 288 536 IPR027417 -
Dod09g1677 544 Gene3D ABC transporter type 1, transmembrane domain 165 537 IPR036640 GO:0005524|GO:0016021
Dod09g1677 544 CDD ABC_MTABC3_MDL1_MDL2 298 535 - -
Dod09g1677 544 PANTHER ABC TRANSPORTER B FAMILY 160 537 - -
Dod09g1677 544 PANTHER ABC TRANSPORTER B FAMILY 24 163 - -
Dod09g1677 544 ProSitePatterns ABC transporters family signature. 437 451 IPR017871 GO:0005524
Dod09g1677 544 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 162 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod09g1677 544 PANTHER BRACHYTIC2 24 163 - -
Dod09g1677 544 PANTHER BRACHYTIC2 160 537 - -
Dod09g1677 544 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 298 534 IPR003439 GO:0005524
Dod09g1677 544 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 164 264 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod09g1677 544 SMART AAA_5 325 517 IPR003593 -
Dod09g1677 544 SUPERFAMILY ABC transporter transmembrane region 36 448 IPR036640 GO:0005524|GO:0016021
Dod09g1677 544 Gene3D ABC transporter type 1, transmembrane domain 28 164 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1677 Dod-Chr9 38532568 38538234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1677 163 537 Calmodulin-binding Proteins AT2G36910 43.455 7.38e-91 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1677 K05658 - sly:101268770 705.671