Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1632 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAATCTTCCCTCAGATATAAGAGAATCGGAAATTGAAGATCTGTTCTATAAGTATGGCCGTATAATGGATATTGAATTGAAGATTCCACCCCGACCTCCATGTTATTGCTTTGTTGAGTTTGACAATGCTCGAGATGCTGAAGAAGCAATTCGCGGTCGAGATGGATACAACTTTGATGGTTGTCGTTTAAGGGTGGAGCTTGCTCATGGTGGTAGAGGCCCATCATCAAGTGATCGCCGTGGCGGTGGCAGTGGCGGTGGCGGTGGTGGTGGCGGTGGTGGTGGCGGCCGCTTTGGCATCTCACGCCATTCTGAATATCGAGTTATTGTTCGTGGACTTCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGCAAAGCTGGTGATGTATGCTTTGCCGAGGTTTCCCGTGATAGTGAAGGGACATTTGGCATTGTTGATTACACTAATTACGATGACATGAAATATGCTATTCGGAAACTGGATGACACTGAATTTAGAAATCCTTGGGCGAGATCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCAAGGAGCCGCAGCCGAAGCCCCAGCAGGAGCAGGAGTCCTAAAAGGGTCAGAAGTAGATCTTTGGAGCGATCTGTGTCCAGGTCACGATCTAAATCCAGATCACCATCACCAATCAAGTCTTCCAGGCCAAGATCACGATCACGATCACGATCTGGATCGCCACGCCAGGTATTCAAAGCTTTTGAATTAAATGATTTGAGAAGCACAAATGTATTCTTGTTGTGTAAAATAGAAAGCATTTCTGATATATCAATATATATTTAA 861 0.4506 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGGGSGGGGGGGGGGGGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVRKYESSRSRSRSRSPSRSRSPKRVRSRSLERSVSRSRSKSRSPSPIKSSRPRSRSRSRSGSPRQVFKAFELNDLRSTNVFLLCKIESISDISIYI* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1632 286 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 256 - -
Dod09g1632 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Dod09g1632 286 MobiDBLite consensus disorder prediction 214 228 - -
Dod09g1632 286 Gene3D - 2 115 IPR012677 -
Dod09g1632 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Dod09g1632 286 SUPERFAMILY RNA-binding domain, RBD 6 184 IPR035979 GO:0003676
Dod09g1632 286 CDD RRM1_SF2_plant_like 8 79 - -
Dod09g1632 286 SMART rrm1_1 119 192 IPR000504 GO:0003723
Dod09g1632 286 SMART rrm1_1 8 78 IPR000504 GO:0003723
Dod09g1632 286 Gene3D - 117 195 IPR012677 -
Dod09g1632 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 182 IPR000504 GO:0003723
Dod09g1632 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Dod09g1632 286 Pfam Fruit fly transformer protein 172 255 IPR010519 GO:0006397|GO:0046660
Dod09g1632 286 MobiDBLite consensus disorder prediction 195 253 - -
Dod09g1632 286 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 256 - -
Dod09g1632 286 MobiDBLite consensus disorder prediction 81 109 - -
Dod09g1632 286 CDD RRM2_SF2_plant_like 118 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1632 Dod-Chr9 38129423 38135112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1632 8 202 Eukaryotic Initiation Factors Gene Family AT4G34110 23.645 9.49e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1632 K12890 - gmx:100800653 352.829