Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1631 ATGGCTGTTGCTGAGAATGCTGGTGCCAAAATCGGTTCTTCCAGTCAAAATTTGGGTAACAGTGTAGTGTCATCGGACGCCACTGAGGTCGAGAAATCGAAGGGTAGGGGTGGTGGGGGTTCTATCAACGGCGATCAGAATCAGAATGGGGTGTTCAACCACCAAGATAGAGCTGCAAGCACTGTGTCAGTCCCCAACAGTAACTACAAGGCTCAGATGCGAAATGGGTTCGAGGGGAATGGGGTCCAGAACCAGCAGCAGATGGTGGTCAACAACAATGATGGGTTTGGGGTTAATGGGGAGAACGGGGGTGAGAGTTTCAAGAGGGATATGAGGGATTTGGAGGAACTGCTCTCAAAGTTGAACCCCATGGCTGAGGAATTTGTGCCCCCATCTCTAACAAACAATCATGGGTACTTGGCTGGAACTGGTGCTGGGTTTGGCTACGCTAACAATTTTTTGCTCCAGAATGGTTATGGCAATGCTAACGGGCAGACTAACAGAAGGAGGAAGAATGGCTATAGTCACGGGAAGCGGAGAGCTAATCATAAGATAGATATGGAGAAAAGAGATGAGATGATTAGGAGGACCGTTTATGTGTCTGACATTGATCAACTGGTTACCGAAGAGCAACTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGACTGCCGTGTATGTGGGGATCCTAATTCTATTCTTCGGTTCGCCTTCATTGAGTTTACAGATGAAGAGGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACTATGCTTGGATATTATCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCTGTTAATCCAACATTTTTGCCCAGGTCTGAAGACGAAAGAGAGATGTGCTCAAGAACTATCTATTGCACAAATATCGACAAGAAGCTCACTCAAGCGGATGTCAAACACTTCTTTGAATCTATCTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGACTACCATCATTCAACTCGAATTGCATTTGTGGAGTTCACAATGGTGATTACTCCTTTCCACCCTTCTTATTCTCATCCGATTCATCTACTGCTGGCATCACTGTTATCCTTTGCAGTAATGCAGTTGTCCCCACCACTTCCCCTGGAAAAAAAAATTCCATTCTGTTTGTACTACTTGTGTGTACACTCCTGA 1176 0.4634 MAVAENAGAKIGSSSQNLGNSVVSSDATEVEKSKGRGGGGSINGDQNQNGVFNHQDRAASTVSVPNSNYKAQMRNGFEGNGVQNQQQMVVNNNDGFGVNGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNNHGYLAGTGAGFGYANNFLLQNGYGNANGQTNRRRKNGYSHGKRRANHKIDMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTMVITPFHPSYSHPIHLLLASLLSFAVMQLSPPLPLEKKIPFCLYYLCVHS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1631 391 MobiDBLite consensus disorder prediction 9 28 - -
Dod09g1631 391 Gene3D - 156 273 IPR012677 -
Dod09g1631 391 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 342 - -
Dod09g1631 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 341 IPR000504 GO:0003723
Dod09g1631 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 261 IPR000504 GO:0003723
Dod09g1631 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 340 IPR000504 GO:0003723
Dod09g1631 391 CDD RRM1_CID8_like 194 273 IPR034823 -
Dod09g1631 391 MobiDBLite consensus disorder prediction 1 51 - -
Dod09g1631 391 SUPERFAMILY RNA-binding domain, RBD 196 341 IPR035979 GO:0003676
Dod09g1631 391 SMART rrm1_1 294 358 IPR000504 GO:0003723
Dod09g1631 391 SMART rrm1_1 197 267 IPR000504 GO:0003723
Dod09g1631 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 271 IPR000504 GO:0003723
Dod09g1631 391 Gene3D - 286 343 IPR012677 -
Dod09g1631 391 MobiDBLite consensus disorder prediction 162 181 - -
Dod09g1631 391 Pfam Ataxin-2 C-terminal region 118 132 IPR009818 -
Dod09g1631 391 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1631 Dod-Chr9 38111517 38116502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1631 195 340 Eukaryotic Initiation Factors Gene Family AT1G34140 24.832 1.05e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1631 - - gmx:100788102 550.051