Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod09g1630 | ATGTCACAGCCAAGGCAGAACAAGATGATGAGTCCAAACGGTGCCAAACAAGTTGGTGACACAACCTATACTAAGATCTTTGTTGGAGGGTTGGCTTGGGAGACCAAGAGAGACACCCTGAAACGGTACTTCGATCAGTTTGGGGAGATCTTAGAGGCTGTTGTCATCACAGACAGAAACACAGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAAGGACCCAAATTCTGCAATAAGAGCATGCCAGAATCCCTATCCTGTGATAGATGGAAGGAGAGCTAATTGTAATCTTGCAGCTCTCGGTGCACAAAAAGTTGATCCATCTATGACAGGAAAGCAGAAATTCATTAGCCCTTCATGGGCTACGGCACCAGTCCCAATTCAAGGCACATCCACTTATTATAATCAGCATATTCCACAGTATACATTTCAGTATCCACCCTACAGGTATCCTGGTTATCCTCCCCAACAAGAAATTTATGAAATGAGTTACTATAACGCATATGGTGGACAGCCCCTTCCATTTCGCTTGTTACCAGCATATTACCAACCTATTTATGGCCTTAGTAGACAGTTGATTCCTGCAGCATATGTGAAAAAGACACAACTCCATGATATGCCACCCCAGGAGTTTACACCTGTTGGCTTGCCAGAACCTATTTCAGCTTTTACTTCAATTTCCAGCACTGGTTCAGTACCTAATTAA | 708 | 0.4336 | MSQPRQNKMMSPNGAKQVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRNTGRSKGYGFVTFKDPNSAIRACQNPYPVIDGRRANCNLAALGAQKVDPSMTGKQKFISPSWATAPVPIQGTSTYYNQHIPQYTFQYPPYRYPGYPPQQEIYEMSYYNAYGGQPLPFRLLPAYYQPIYGLSRQLIPAAYVKKTQLHDMPPQEFTPVGLPEPISAFTSISSTGSVPN* | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod09g1630 | 235 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN | 1 | 232 | - | - | |
| Dod09g1630 | 235 | PANTHER | BOULE-RELATED | 1 | 232 | IPR037366 | GO:0003729 | |
| Dod09g1630 | 235 | Gene3D | - | 1 | 114 | IPR012677 | - | |
| Dod09g1630 | 235 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 26 | 83 | IPR000504 | GO:0003723 | |
| Dod09g1630 | 235 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 24 | 101 | IPR000504 | GO:0003723 | |
| Dod09g1630 | 235 | CDD | RRM_RBM24_RBM38_like | 24 | 99 | - | - | |
| Dod09g1630 | 235 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 99 | IPR035979 | GO:0003676 | |
| Dod09g1630 | 235 | SMART | rrm1_1 | 25 | 97 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod09g1630 | Dod-Chr9 | 38106245 | 38107521 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod09g1630 | 20 | 100 | C2H2 Transcription Factor Family | AT2G19380 | 43.210 | 1.16e-15 | 73.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod09g1630 | - | - | gmx:100788634 | 385.956 |