Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1617 ATGATGGAAGGAGAGGAGTATATTCAAGCATCAAAAGGAAAAAATGTTGAAAGCCTCACCTGCTCAGACCCACCATCAGCTCAGAATCAAAAGAAGAAAAAGAGCAAGATGGAGAACAAGAGAAGGTTCAGTGATGAGCAAATAAGATCACTAGAATGCATATTCGAATCAGAGTCAAAGCTGGAGCCAAGGAAGAAGATTCAGCTGGCAAGAGATCTTGGCCTGCAGCCACGACAAGTAGCCATATGGTTCCAGAACAGAAGGGCAAGGTGGAAATCAAAGCGGATAGAGCAAGAGTACAGGAAGCTCAGAGATGAATATGACAATTTAGCATCTCGGTTTGAGTCCCTAAAGAAAGAGAAGGAGTCTTTGCAATTAGAGTTACAGAAGCTCAGTGAGTTGTTGGTGACACCTCATGATGGTAGAAGAGAAGACAAGGTTACTAAGGGAAATAGCACAGATGATGGTGGTTCAGGCAGTGGCCGCAGTGCATACAGCAATTGGAGGGCTGAAGAAGCAAAGCCAAGTTTCTCAAATGAGGGTGTCGAGGACACAGCAGCCTTGCATTCAGATGATCAAAATGAAAAGAGCATAAAGGGTGAGAAATCTGAGGAGACTCTGAAGATGGATGATGAGCATTTAGAGATTCATTTGGCATCACTTGAGAAATGGTACAGTGAGGATCCAAGTGGTATATTGGATCAGTCATACAGCAGTTCACAACAATGGTTGGATTTCTGGACTTGA 747 0.4351 MMEGEEYIQASKGKNVESLTCSDPPSAQNQKKKKSKMENKRRFSDEQIRSLECIFESESKLEPRKKIQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLRDEYDNLASRFESLKKEKESLQLELQKLSELLVTPHDGRREDKVTKGNSTDDGGSGSGRSAYSNWRAEEAKPSFSNEGVEDTAALHSDDQNEKSIKGEKSEETLKMDDEHLEIHLASLEKWYSEDPSGILDQSYSSSQQWLDFWT* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1617 248 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Dod09g1617 248 SMART HOX_1 37 98 IPR001356 GO:0003677
Dod09g1617 248 Pfam Homeodomain 40 92 IPR001356 GO:0003677
Dod09g1617 248 MobiDBLite consensus disorder prediction 29 43 - -
Dod09g1617 248 Coils Coil 86 134 - -
Dod09g1617 248 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 248 - -
Dod09g1617 248 MobiDBLite consensus disorder prediction 13 28 - -
Dod09g1617 248 MobiDBLite consensus disorder prediction 185 208 - -
Dod09g1617 248 MobiDBLite consensus disorder prediction 1 43 - -
Dod09g1617 248 SUPERFAMILY Homeodomain-like 21 94 IPR009057 -
Dod09g1617 248 Pfam Homeobox associated leucine zipper 94 135 IPR003106 GO:0006355|GO:0043565
Dod09g1617 248 PRINTS Lambda-repressor HTH signature 74 90 IPR000047 GO:0003677
Dod09g1617 248 PRINTS Lambda-repressor HTH signature 65 74 IPR000047 GO:0003677
Dod09g1617 248 MobiDBLite consensus disorder prediction 135 208 - -
Dod09g1617 248 CDD homeodomain 40 95 IPR001356 GO:0003677
Dod09g1617 248 Gene3D - 19 99 - -
Dod09g1617 248 MobiDBLite consensus disorder prediction 136 151 - -
Dod09g1617 248 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Dod09g1617 248 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 248 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1617 Dod-Chr9 37922138 37922998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1617 1 248 Homeobox Transcription Factor Family AT2G46680 40.892 4.85e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod09g1617 Homeodomain 2.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1617 K09338 - gmx:100499926 312.383