Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1600 ATGGCTAGTGAATTATTGGTTCGTGCTTCAGTTGTCCCAGCATCTGAGTTACTTTCCCGGACAGTCTGTGATATAGTTGATACTATCAAAGCAGCCAATGAGGTTCTCATTCACAAGGAAAATTTTAAGAAATTCTCAATTCACTTGGAGAAGATCTCATCTATATTGAAGTCTTTACCAATACAAGACATACAGAATCCTGAGAGCTTGAAAAATGCTATGGATGGTCTCAACCAGGCTATTACAGTTGCTAAGCAGCTGGTTTTTGAGTGCATCAGTAGAAGTAAGGTTTATCTTCTAATCAATTCCAGAAGGATCGTTACACACTTGAAGTGTTGCGCAGAAGATATAAGTCGAGCAGTGAACCTGATCCCTTTGGCCTCTCTTGACATTAACTCTGGTTTAAATGAAAAGATAAGTGAGTTATGTCAGAACATGTTGGATGCTGAGTATCAAGCAGCAGCAACAGATGAGGAAATCTTAGAAAAAATTGAGAAGGCAATACAAGATGGAAATGCTGAAAGGTCATATGCAAATCAGTTGCTATGTTGTATTGCAGATGCCATTGGGGTCTCCACTGAGCAACCTGCTTTGAAGAGAGAATTTGAAGAGCTGAAACATGAAATGGAAAGTGCCAAGTCCAGGAAAGAGGTGGCAGAAGCTCTACATTTGGAACAGCTTATTGCAGTACTTGAAAAGGCTGATGCCATAACTTCGGCACAGGAAAAGGAAAATAAGTATTTCGAAAAGCGAAATTCTTTGGGAAGGAGACCATTGGATGCTTTGCAGTCATTTTACTGCCCAATCCTTCATGATATTATGGTGGACCCTGTAGAGACTTCATCTGGCAAGACATTTGAGAGAAGTGCAATAGAAAGGTGGTTTGCTGAAGGGAAAACTCACTGTCCCTTGACCATGTTGCCTTTGGATACTTCAATCTTAAGGCCTAATAAGACTCTTCGACAGTCTATTCAGGAATGGAAAGACAGGAACACAATTATTACCATTTCTACTATCAAATCCCAACTTCAAACAAATGAAGAAGAGGAAGTCCTTCAATCCTTAGCAAAATTGCAGGACCTATGCTTAGAAAGAGAGATACATAGAGAATGGTTAAAAATGGAGAATTACATTGCTGTTCTTGTTGGACTCCTTGGTTCTAAAAATCGTGAAATAAGGAAGCGTGTTCTGCTCATCCTGTCTTTGCTTGCAAAGGATAATGGAGAGAACAAGGAAGATATTGCTAAAGTGGATAATGCACTTGAATCAATTGTTCGTTCACTTGCGCGTCAACTTGAGGAAAGAAAGTTAGCACTGGAGTTGCTCTTGGAGTTATCTAAAATTAACGTGGTGCGTGATCTCTTAGGAAACATTCAAGGAAGCATACTTCTAATGGTGACAATGTTAAACAATGATGATGCTGAAGCGACCAGCAATGCACATGAACTGCTGGAGAACCTCTCTTTCCTTGATCAGAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAACCTTTGCTGCTGAAACTTTCTACAGGGTCAGAAAATATGAAGATGGTCATGATTGAAACTTTGTCCAAAATTGCTTTGACCGACCAGATTAAATTGTCTCTAGTTAAAGATGGGGCATTGCAGCCTCTTCTTCAGCTGTTCTTAAATAATGATGTGGAAATCAAGAAAGTGGTTGTCAGAGCTTTACGACAGCTCTCAAGCTTGCCAGAGAATGGCCTGCAGATGATTAGGGAAGGTTTTGCTCAACCACTATTGGAACTGCTATACTATCACAGTTTACAGTCACCTACTCTATGTGAGGAGGTTGTTGCCACAATAATGCATCTTGCCATATCAACCACTCACCAACAAGATGAAGTAGAGCAGGTTTCATTGTTAGATTCTGAGGAAGATGTATTCAAATTCTTCTCTTTAATTTCTTTAACGGAACCTGATGTACAAAACAAGATTCTTAAAGCTTTCCAGGCACTGTGCCAATCTTTCTGTGGCTTCAACATCAGAACGAGGTTGAGACAGATCTCCGCTGCTAAAGTGTTGGTCCGCTTGTTAGAGCTCGAAACCCAAACAGTGCAGGCAAATGCCTTGAAGCTTTTCTACTGCTTGACAGAAGATGGTGATAGCAGCTACTTATCATCACATGTAACTGAAAGATTCATTAAAGTTTTGCTTACCATCATTGAATCTTCCGTTGATGCTGAAGAGATGGTTGCTGCTATGGGCATCATTGCTAAACTACCACAGGAGTCACACATAACCCAGTGGCTTCTAGATTCTGGAGCACTCCAAACTATTTCAGCTTGTCTTAAAGATCAACAAAAACATGCCTCACACAGAAAGCAAGTCACAGAGAACTCTGTCCAAGCTCTCTGTCGTTTTACTGTCTCAACAAATCTGGAGTGGCAGCAGAGAGTAGCTGAAGCAGGCATGATCCCAATGCTGGTGCAATTGCTGGTTTCTGGAACACCTTTTTCAAAACAAAGCGCAGCTGTTTCGATCAAGCAGCTTTCAGAAAGTTCATACAGCTTGAGCAAGCCGATAAAGAAGCCGAGTATTTTCAAACGCTGCTTTACACCTGGAGAAACTGGTTGCCCAGCACACATTGGCACATGTAGAGTTGAGTCTTCATTCTGCATATTTCAAGCCAATGCCTTGGAGCCCCTTGTGCGGATGCTCTCAGAGCAAGATGTTGGAACATGCGAAGCTTCTTTAGATGCTCTGATGACTTTGCTTGATGGGCAAACATCACATAACGGAAGAAAGGTACTCGCAGATGCAAATGCCGTCGAGCCAATGATAAAACTGCTGACTGTTCCAGAATCCAGATTGCAGGAGAAGACTATTATAGCTTTAGGACGAATCTTTGAATTGGATGAAGTCAAAAACAAGTACAAGGCAGTGGCCACAATGCCATTGGTAGCAATAACTCAGAGTAAAGAGAACCGTTTGAAAAGTCTTGCAGCCAGAAGCCTTTCTCAATTGGGTGTACTTGATAAACAGTCTTCTTATTTTTAG 3024 0.4104 MASELLVRASVVPASELLSRTVCDIVDTIKAANEVLIHKENFKKFSIHLEKISSILKSLPIQDIQNPESLKNAMDGLNQAITVAKQLVFECISRSKVYLLINSRRIVTHLKCCAEDISRAVNLIPLASLDINSGLNEKISELCQNMLDAEYQAAATDEEILEKIEKAIQDGNAERSYANQLLCCIADAIGVSTEQPALKREFEELKHEMESAKSRKEVAEALHLEQLIAVLEKADAITSAQEKENKYFEKRNSLGRRPLDALQSFYCPILHDIMVDPVETSSGKTFERSAIERWFAEGKTHCPLTMLPLDTSILRPNKTLRQSIQEWKDRNTIITISTIKSQLQTNEEEEVLQSLAKLQDLCLEREIHREWLKMENYIAVLVGLLGSKNREIRKRVLLILSLLAKDNGENKEDIAKVDNALESIVRSLARQLEERKLALELLLELSKINVVRDLLGNIQGSILLMVTMLNNDDAEATSNAHELLENLSFLDQNVIEMAKANYLKPLLLKLSTGSENMKMVMIETLSKIALTDQIKLSLVKDGALQPLLQLFLNNDVEIKKVVVRALRQLSSLPENGLQMIREGFAQPLLELLYYHSLQSPTLCEEVVATIMHLAISTTHQQDEVEQVSLLDSEEDVFKFFSLISLTEPDVQNKILKAFQALCQSFCGFNIRTRLRQISAAKVLVRLLELETQTVQANALKLFYCLTEDGDSSYLSSHVTERFIKVLLTIIESSVDAEEMVAAMGIIAKLPQESHITQWLLDSGALQTISACLKDQQKHASHRKQVTENSVQALCRFTVSTNLEWQQRVAEAGMIPMLVQLLVSGTPFSKQSAAVSIKQLSESSYSLSKPIKKPSIFKRCFTPGETGCPAHIGTCRVESSFCIFQANALEPLVRMLSEQDVGTCEASLDALMTLLDGQTSHNGRKVLADANAVEPMIKLLTVPESRLQEKTIIALGRIFELDEVKNKYKAVATMPLVAITQSKENRLKSLAARSLSQLGVLDKQSSYF* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1600 1007 CDD RING-Ubox_PUB 265 306 IPR045210 -
Dod09g1600 1007 Pfam MCAfunc domain 29 158 IPR045766 -
Dod09g1600 1007 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Dod09g1600 1007 Gene3D - 869 1004 IPR011989 -
Dod09g1600 1007 Gene3D - 663 852 IPR011989 -
Dod09g1600 1007 Gene3D - 338 662 IPR011989 -
Dod09g1600 1007 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Dod09g1600 1007 SUPERFAMILY ARM repeat 335 663 IPR016024 -
Dod09g1600 1007 Gene3D - 20 128 IPR036537 GO:0007166
Dod09g1600 1007 SMART arm_5 572 615 IPR000225 GO:0005515
Dod09g1600 1007 SMART arm_5 801 841 IPR000225 GO:0005515
Dod09g1600 1007 SMART arm_5 875 915 IPR000225 GO:0005515
Dod09g1600 1007 SMART arm_5 407 447 IPR000225 GO:0005515
Dod09g1600 1007 SMART arm_5 531 571 IPR000225 GO:0005515
Dod09g1600 1007 SMART arm_5 490 530 IPR000225 GO:0005515
Dod09g1600 1007 SMART arm_5 752 798 IPR000225 GO:0005515
Dod09g1600 1007 SMART arm_5 918 959 IPR000225 GO:0005515
Dod09g1600 1007 Pfam Armadillo/beta-catenin-like repeat 534 571 IPR000225 GO:0005515
Dod09g1600 1007 SUPERFAMILY RING/U-box 250 333 - -
Dod09g1600 1007 Coils Coil 195 222 - -
Dod09g1600 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Dod09g1600 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1007 - -
Dod09g1600 1007 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Dod09g1600 1007 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 9 1007 - -
Dod09g1600 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 337 IPR013083 -
Dod09g1600 1007 SUPERFAMILY ARM repeat 675 997 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1600 Dod-Chr9 37778242 37782198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1600 263 1007 U-box Gene Family AT1G76390 27.010 1.35e-55 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1600 - - gmx:100818273 1445.64