Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1561 ATGATCATCAAGCGGAACTTGAAATCCCAAATGCCGAGTCTGAAACGGTGCAGACTCAGCGACCCGGTTGGTAGAAACGACGAGTGCTCCGCGACTCGGAAGAAGAGGAAGACCACCAACAACGGGTACTATCCTCTCAACCTCCTCGGCGACGTTGCCGCCGGCGTGATTCCGGTGAGCCTCCACGGCCTGCTGAGCGCCGCCGACGCCTCGGAGAAGGGCTTCTCTGCTTCCTGGTGCACCGAACTCCCCTGCTCCCCTGGCGAAGTGGAATCCCAAAAAGAAGGCGGCGCCGCCGCAAACGGCGTTGTTCCGGCGAGAAAAAACCGTTCCCGCGAGGTTCAGCGACCGCCTCTGGTTCGTACCTCGAGGGGTCGGGTTCAGGTGCTTCCTTCTCGGTTCAACGACTCTGTTATTGATAATTGGAGGAAAGAGAGTAAGAATGATTTGCGTGATTGTGAGTTTGATGATGAATTTGAGTGCAAAAAGGAGAGATTCAGTTTCAAGGCACCCAAGAATTGCAATCAGAATGGGAAGAAAGGTTACAAGGGTCGCAAGTATTCGGCATTGTGTGGTGAGGGTTTTGATGTGAAGAAGCATTCAAGGCGTGAGGTTCTGGTTGAGGATGAGAGGGGAAGGTTTGTGGAGGTGGAAGGTGTTGAGTTAATGGGGAGTGAGAGGAGGGAGGGGCTGTATGGACCAGAAGATTTTTATGCTGGTGATATAGTGTGGGCCAAAGCAGGGAAGAAGGAACCTTTTTGGCCAGCCATTGTTCTTGATCCTATGAATCAGGCACCTCAGCTGGTCCTCAGGTCTTGTATTGCTGATGCAGCTTGTGTCATGTTTCTTGGGTACGCGGGGAATGAGAATCAAAGGGATTATGCATGGGTTAAGCATGGCATGATTTTTCCTTTTATGGATTATGTGGACAGGTTTCAGGGGCAGTCTGAATTGAGTTCCTATAATCCCTCTGAATTTGAAATGGCCATAGAGGAGGCATTTTTGGCAGACCAGGGCTACACGGAGAAGTTGATAGCAGATATAAATGCAGCAGCCGGTAACACTGGTTTTGATGATACCATTCTAAAAGCACTCACTGGTTCAAACAAGTATGCAGGATATCACTTTCTGAATCAGGATTTATTTGACAAGAAAGACACAAGACCCTGTGAAGCCTGTGGATTGCGCATTCCTTTCAAATTGCCAAAGAAAACAAAGGGTTCGGCTCCTGGTGGCAAATTCTTGTGTAAAACATGTGCTAGGTTAACAAAATCAAATCATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCGGACAGTGGAAGTTGGGTACGCTGTGATGGATGTAAAGTGTGGGTGCATGCAGAGTGCGACAAAATTTCTCGAAACCTTTTAAAGAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATGCAGAAAAATCACAGCCAAAAGTCAAGTCAAATAAAAACAGTGGACAGCTAGTGCTTCCAAATAAAGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTCAGTTGTGTGCAAGTGTGGTCTTTGTGGGACTGAAAAGCAAGCACTTAGTGAATGGGAACGACACACAGGTTCCAAATTAAGAAATTGGAAATCAAGTATTAGGGTCAAGGACACCATGCTACCGCTGGAACAATGGATGCTGCAGTTGGCAGAATTCCATGCTAATGCTGTAGTTTCTGTCAAACCTAAAAAACCTTCTCTAAAAGAAAGGAAGCAGAAGTTGCTTGCCTTCTTGCAAGAGAAGTATGAACCTGTTTATGCTAAGTGGACAACAGAACGTTGTGCTGTATGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGTGCAAGAAATGTTCAAGACTTTACGTCTTGGGTTTGTAAGGCTTGTGAGACACCTGACATCAAGCGAGAGTGTTGTCTTTGTCCTGTAAAAGGCGGTGCTCTAAAGCCAACCGATATTGACTCATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCCAGTGGTGAGAAGATGGAACCTGCTTTGGGTATTCTGAGTATTCCTTCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCACTGGTTCATGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTATCGGATGGAGCTGCATATTTCTGA 2316 0.4564 MIIKRNLKSQMPSLKRCRLSDPVGRNDECSATRKKRKTTNNGYYPLNLLGDVAAGVIPVSLHGLLSAADASEKGFSASWCTELPCSPGEVESQKEGGAAANGVVPARKNRSREVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKNDLRDCEFDDEFECKKERFSFKAPKNCNQNGKKGYKGRKYSALCGEGFDVKKHSRREVLVEDERGRFVEVEGVELMGSERREGLYGPEDFYAGDIVWAKAGKKEPFWPAIVLDPMNQAPQLVLRSCIADAACVMFLGYAGNENQRDYAWVKHGMIFPFMDYVDRFQGQSELSSYNPSEFEMAIEEAFLADQGYTEKLIADINAAAGNTGFDDTILKALTGSNKYAGYHFLNQDLFDKKDTRPCEACGLRIPFKLPKKTKGSAPGGKFLCKTCARLTKSNHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISRNLLKNLEGTDYYCPTCKAKFDFELSDAEKSQPKVKSNKNSGQLVLPNKVTVLCNGVEGIYFPSLHSVVCKCGLCGTEKQALSEWERHTGSKLRNWKSSIRVKDTMLPLEQWMLQLAEFHANAVVSVKPKKPSLKERKQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVCKACETPDIKRECCLCPVKGGALKPTDIDSLWVHVTCAWFRPEVSFASGEKMEPALGILSIPSNSFVKICVICKQIHWFMYTMLQVFHLFPCHVCIKGWLSDGAAYF* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1561 771 ProSiteProfiles Zinc finger PHD-type profile. 426 482 IPR019787 -
Dod09g1561 771 SUPERFAMILY FYVE/PHD zinc finger 621 685 IPR011011 -
Dod09g1561 771 ProSitePatterns Zinc finger PHD-type signature. 623 668 IPR019786 -
Dod09g1561 771 SMART PHD_3 622 669 IPR001965 -
Dod09g1561 771 SMART PHD_3 428 480 IPR001965 -
Dod09g1561 771 MobiDBLite consensus disorder prediction 90 113 - -
Dod09g1561 771 Pfam PHD-finger 635 669 - -
Dod09g1561 771 ProSiteProfiles PWWP domain profile. 239 308 IPR000313 -
Dod09g1561 771 ProSiteProfiles Extended PHD (ePHD) domain profile. 674 771 IPR034732 -
Dod09g1561 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 673 IPR013083 -
Dod09g1561 771 ProSiteProfiles Zinc finger PHD-type profile. 620 671 IPR019787 -
Dod09g1561 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 484 IPR013083 -
Dod09g1561 771 Gene3D - 234 340 - -
Dod09g1561 771 CDD PHD_ATX3_4_5_like 622 668 IPR042011 -
Dod09g1561 771 Pfam PHD-finger 428 481 IPR019787 -
Dod09g1561 771 SUPERFAMILY Tudor/PWWP/MBT 232 337 - -
Dod09g1561 771 Pfam PHD-zinc-finger like domain 676 740 - -
Dod09g1561 771 PANTHER PHD FINGER PROTEINS 1 741 - -
Dod09g1561 771 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 741 - -
Dod09g1561 771 SUPERFAMILY FYVE/PHD zinc finger 425 484 IPR011011 -
Dod09g1561 771 Pfam PWWP domain 240 333 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1561 Dod-Chr9 37348084 37354680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1561 623 738 C2H2 Transcription Factor Family AT3G14740 37.190 4.91e-16 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod09g1561 PWWP 8.1e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1561 - - aprc:113853254 1280.39