Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1532 ATGGATGACAGCTTATCTGATATTTTTGAAGACAAGGACTTTGGTGGAGACGACCTCTTTGCCATTTTGGAGAGCCTCGAAGACTTCACCACCGATTTTCCTCCCATTAACGGTGCTGTTATCAGCTCAACTTCGAAAGAGAACGAGGAAACCTCGAGATTGGTGTCCCAGAAGTCAACCTCTTCGAGTGCTCCACAAGACTCAGAGACGGAGCCTGAAGCCTCACCCAAAAGCAAGAGACAGAAGCTTGCTTCACCGGAGGAACCGAACCAAGATGGACAACAAAGGATATCACATATCACCGTGGAGCGCAACCGAAGAAAGCAAATGAACGAGCATTTGTCCGTGTTGAGGTCACTCATGCCTTGCTTTTATGTCAAAAGAGGAGATCAAGCATCGATAATTGGAGGTGTGGTTGATTACATCAACGAGTTGCAGCAGGTGCTCCAAGCCCTGGAGGCCAAGAAACAAAGAAAAGTTTACAGTGATGTACTAAGCCCTAGGCTAGTTTCAAGCCCAAGGCCTTCACCACTTAGTCCTCGAAAGCCACCCATGAGCCCTAGGCTAAACTTGCCCATTAGCCCAAGGACTCCACAACCAGGTAGCCCTTACAAGCCGAGGTTGCAGCAAGGTTTCAACATCCCATCATCTTCCATATCCAACAACTCTCTGGAGCCATCTCCTACTTCTTCCACTTCCTCCATCAACGACAACATCAACGAGCTTGTTGCCAATTCCAAGTCTGCAATTGCTGACGTGGAGGTCAAGTTTTCAGGTCCGCACGTTCTTTTGAACACCGTGTCCCAACGAATTCCCGGGCAGGCTCTGAAGATCATATCAGCGCTTGAAGACCTTGCGCTTGAAATCCTCCGTGTGAATATTAATACTAATGATGAAACCATGCTAAGTTCATTCACCATCAAGATTGGAGTTGAATGCCAACTCAGTGCCGACGAACTTGCTCAACAAATCCTGCAAACATTCTGCTAA 990 0.4747 MDDSLSDIFEDKDFGGDDLFAILESLEDFTTDFPPINGAVISSTSKENEETSRLVSQKSTSSSAPQDSETEPEASPKSKRQKLASPEEPNQDGQQRISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSDVLSPRLVSSPRPSPLSPRKPPMSPRLNLPISPRTPQPGSPYKPRLQQGFNIPSSSISNNSLEPSPTSSTSSINDNINELVANSKSAIADVEVKFSGPHVLLNTVSQRIPGQALKIISALEDLALEILRVNINTNDETMLSSFTIKIGVECQLSADELAQQILQTFC* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1532 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 166 IPR036638 GO:0046983
Dod09g1532 329 SMART finulus 100 151 IPR011598 GO:0046983
Dod09g1532 329 MobiDBLite consensus disorder prediction 173 202 - -
Dod09g1532 329 Pfam Helix-loop-helix DNA-binding domain 95 146 IPR011598 GO:0046983
Dod09g1532 329 Coils Coil 138 158 - -
Dod09g1532 329 PANTHER - 7 329 - -
Dod09g1532 329 Gene3D - 86 159 IPR036638 GO:0046983
Dod09g1532 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 145 IPR011598 GO:0046983
Dod09g1532 329 MobiDBLite consensus disorder prediction 72 86 - -
Dod09g1532 329 MobiDBLite consensus disorder prediction 203 236 - -
Dod09g1532 329 CDD bHLH_AtFAMA_like 97 168 - -
Dod09g1532 329 MobiDBLite consensus disorder prediction 167 236 - -
Dod09g1532 329 MobiDBLite consensus disorder prediction 36 71 - -
Dod09g1532 329 PANTHER TRANSCRIPTION FACTOR FAMA 7 329 IPR044283 GO:0003700|GO:0010052
Dod09g1532 329 MobiDBLite consensus disorder prediction 30 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1532 Dod-Chr9 36966984 36969888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1532 9 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 54.277 5.63e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod09g1532 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1532 K20558 - gmx:100777437 449.514