Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1525 ATGAAGAACAACAACAGCTACAACGACATCATCATGGAACAGAGTATCCTATGCAAATACACTGTCCACCACAGCGTCACCAACAAGTTCACGAAACCACCGTCAAACAAGAAGCCCTCTCCAGAGCCAAGAACAGTGCGCATATCCTACACCGATCCAGATGCCACTGACTCCTCCAGCGACGAAGAAGCCCAAACCTACCCTTTCCGCAACAGAGTCAAGCGATACATCAACCGCATTCAAATCGAAACCGCCACCAAAAACGGCGCCTCTTCAAGGAAGAGGGCCTCCGGAGATGCCGTTCCCATCCGCCGGCCGGCGAAGGCTCAGGCTCCGGTGACCACTACAAACAACGGCGTGAGGAAGTTCCGCGGCGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTAGAGACCCGGCGAAAAAGGTGAGACTCTGGTTGGGAACCTACGAAACCGCTGAAGAAGCTGCCATGGTTTACGACAATGCCGCGATTCAGATTCGCGGCCCCAACGCTCTCACCAACTTCATCACGCCGCCGCAGAAGGAAGAAATGAAGGTGGTTGTGAACGCAGAAGCTTCCGGTTCCAGCTACGATTCCGGCGACGGAAGGTGCCTCAACCTCTCCTCCCCAACCTCTGTTCTCCAATTCAGGAGCAGCGAAACGGAAGAGCCAAAGAAACCGCCTGAACCGGAAGAAGTGAGTGACGGGTCGGTTTCAGTAATGGGAGAGTTTTTCAGAGAGTGTCAAGGGGAGACGAGTTTGTTCAACGAGAGCAGTGAGTTTTTCCGGTTGGACAGCATTATGCCTGTTTGGGATGACGTGTTCGATTTGCAGACGCCGCAGTACTACCCTGCTGTGTTGTTCGAGGAGGAGCAGCAGCAAATGCAGATGTTGGGCGAAACGACGCCGTTTTGCTCCTCGGACGAGGATTTCAGTGACTACAGCATCGTCCTTGCTGATTCCCTCATCGATTTTGATAAGGCTTGCTCCTCCATCTAG 1008 0.5387 MKNNNSYNDIIMEQSILCKYTVHHSVTNKFTKPPSNKKPSPEPRTVRISYTDPDATDSSSDEEAQTYPFRNRVKRYINRIQIETATKNGASSRKRASGDAVPIRRPAKAQAPVTTTNNGVRKFRGVRQRPWGKWAAEIRDPAKKVRLWLGTYETAEEAAMVYDNAAIQIRGPNALTNFITPPQKEEMKVVVNAEASGSSYDSGDGRCLNLSSPTSVLQFRSSETEEPKKPPEPEEVSDGSVSVMGEFFRECQGETSLFNESSEFFRLDSIMPVWDDVFDLQTPQYYPAVLFEEEQQQMQMLGETTPFCSSDEDFSDYSIVLADSLIDFDKACSSI* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1525 335 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Dod09g1525 335 MobiDBLite consensus disorder prediction 27 66 - -
Dod09g1525 335 MobiDBLite consensus disorder prediction 216 240 - -
Dod09g1525 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 16 316 - -
Dod09g1525 335 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 316 - -
Dod09g1525 335 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Dod09g1525 335 SUPERFAMILY DNA-binding domain 122 178 IPR016177 GO:0003677
Dod09g1525 335 Gene3D AP2/ERF domain 121 180 IPR036955 GO:0003700|GO:0006355
Dod09g1525 335 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Dod09g1525 335 MobiDBLite consensus disorder prediction 51 66 - -
Dod09g1525 335 CDD AP2 122 178 IPR001471 GO:0003700|GO:0006355
Dod09g1525 335 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Dod09g1525 335 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1525 Dod-Chr9 36891631 36892638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1525 18 227 AP2-EREBP Transcription Factor Family AT4G27950 47.685 1.87e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod09g1525 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1525 - - lang:109327510 349.747