Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1461 ATGGGCACTGAGGATGGAACTAGCAATGCTGATAACAGTAGCACAGAAGGAGTTAAATGTTTGAAAAGTTATAATAATAGGGTGGAGATTGCAGCAGATGGGAATGATGTTGTTGAAGGGACTCTGCTCTTGAAAGGTCAACCCGTTAGTATTGGGGTCCCAATTGCGGATGGAAAGGGTGTTTCTGAAGAGATTTTGCTATTGAAAACTGAAGCGATTAGTAATTGGGTGGAAATCGCAGATGGGAATGGTGTTGCTGAAGAGGTTCCACAATTGAAACTTGATGACGCCATTAGTAATGGGGTGCCAAGTGCAGATAGAAATGGTGTTGCTGGAGAGACTTTGCTCTCGAAAAGTGAAACCATCGGAAATGGGGTGGCAATTTCAGATGGCTTCGATTCTGCTGACAGGGACTCTGGTGGAATCGAGTGCTTGCGAACTTATAAGAGGCGAAAGCATGTGAAGTCGAGTTCTGAAAACAAAGTTCAGGAAGACTACAGACAGTGTATGGAAGTTGCAAGCCACCTTGCTGACCAGGTTTTGAAGGAGCCATGCCATGTAGCTTTAGGCAGTACTTCAGATAGTTATTCACATGGACAATGGGGAAACATTGTATTAAAGCATTTATATCAGTCATTAGGTGATGGTCATGTTGCTTTGAAGGGGTGCATTAAGGAAGCACTAATGCATCATCCTAAAATTAGCTGTGCTACTGCCACTACTGTTACGGAAACCTTTAAAAGTGACAAAGATGGACAAGGTTGCTCTTCACAATTTGAGTGTTTATCTCAGAGAATGCGGAGTGAAGCTAATCGGCATGCAAATGTCATGCCTAATGGATGTTCTAGTGAACCACATGGCCATGGTATGACCGACATGTGTCAGCGTGTGCTGTGTAATATCTTGACCTCTGAAAAATTCAGTTCATTGTGTAAGGTTCTACTTGAAAATTTCCAAGGAATGAAGCCTGAAAATGTATTTGACTTTAGTGTCATGAACTCAAGGATGAAGGAGCATGCTTATGAACAATCTCCTACACTTTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGTAACGAGATTGTTGCTCTTGCAAAGAGCCTCTCCAACATATCAAGAACGTCCTACTGTGAACTGTTCGACAACGACGAATCTGATCTTCACATGAAACCAGAGCAGACAGAAGAATGTGCTATGTATAAAGTATGCAGTTGCAGACAATGTGGAGACATGGCATATGGTGTGGACTGTTTGGTTTGTGATTCATGTGAGGCAATGTACCATGTGTCCTGTATTGAGCCTGCAGTGAAAGAAATGCCCCACAAAAGCTGGTATTGTGCGAGTTGTACTGCTAATGGTTGTGGATCTATGCATGAGAATTGTGTGGTATGTGAAAAGTTGGATAGTGCAAAAACCCTGAACAGCACGGTTGGAGATGAAAGTTTCCCTAAGATTGAGGAAACACTAAATGAATTGAAAGAGAATTCAAATGGTACCTTTGAGGGGATTCAAATATTAGCAGGTGGGGAAAAACCACCCCGTTGCAAAATGTGTGGAAATGATGTGGATGGTGAAAAAACAAAAATATGTGGTCACCCGTTTTGCCCAAATAAATACTACCATGTAAGGTGTCTGACTAGTAAGCAGTTAAACACCTATGGGCCCTGTTGGTACTGCCCTTCTTGTCTATGCCGAGTTTGCTTCACTGATAAAGACGATGATAAGATTGTCCTCTGTGATGGCTGTGATTATGCATACCACATCTATTGCATGAATCCTCCACGAAGTTCTGTTCCCAGACGCAAATGGTTCTGCAGAAAATGTGATGCAGCAGTCCAAGAAATACGCCGGGCAAAGAAGGCATACGAGAGTAACAAGTGGAGAAGAACTGCAGAAGATGTTTCAAAGTCAAGTGCTAATCTTGAAAAGAGTAACAAGTGGAGAAGAACTGGGGAAGATGTTTCGAAGTCAAGTGCTAATCTTGAAAAGAAGTCCAACAATAAACGTGCAAGAGAACTAGAAAAAGGTGGAGGAATGGACATGCTTTTAACTGCTGCCAATTCTCTGAATTTTGAAGAGAACCTGGTTGCAATCCAGATTGAGTCTCAGAGGACATGA 2133 0.4219 MGTEDGTSNADNSSTEGVKCLKSYNNRVEIAADGNDVVEGTLLLKGQPVSIGVPIADGKGVSEEILLLKTEAISNWVEIADGNGVAEEVPQLKLDDAISNGVPSADRNGVAGETLLSKSETIGNGVAISDGFDSADRDSGGIECLRTYKRRKHVKSSSENKVQEDYRQCMEVASHLADQVLKEPCHVALGSTSDSYSHGQWGNIVLKHLYQSLGDGHVALKGCIKEALMHHPKISCATATTVTETFKSDKDGQGCSSQFECLSQRMRSEANRHANVMPNGCSSEPHGHGMTDMCQRVLCNILTSEKFSSLCKVLLENFQGMKPENVFDFSVMNSRMKEHAYEQSPTLFLSDIQQVWRKLQDTGNEIVALAKSLSNISRTSYCELFDNDESDLHMKPEQTEECAMYKVCSCRQCGDMAYGVDCLVCDSCEAMYHVSCIEPAVKEMPHKSWYCASCTANGCGSMHENCVVCEKLDSAKTLNSTVGDESFPKIEETLNELKENSNGTFEGIQILAGGEKPPRCKMCGNDVDGEKTKICGHPFCPNKYYHVRCLTSKQLNTYGPCWYCPSCLCRVCFTDKDDDKIVLCDGCDYAYHIYCMNPPRSSVPRRKWFCRKCDAAVQEIRRAKKAYESNKWRRTAEDVSKSSANLEKSNKWRRTGEDVSKSSANLEKKSNNKRARELEKGGGMDMLLTAANSLNFEENLVAIQIESQRT* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1461 710 MobiDBLite consensus disorder prediction 647 680 - -
Dod09g1461 710 Pfam PHD-finger 569 615 IPR019787 -
Dod09g1461 710 ProSiteProfiles Zinc finger PHD-type profile. 566 616 IPR019787 -
Dod09g1461 710 Gene3D - 301 458 - -
Dod09g1461 710 SUPERFAMILY FYVE/PHD zinc finger 568 622 IPR011011 -
Dod09g1461 710 SUPERFAMILY FYVE/PHD zinc finger 405 455 IPR011011 -
Dod09g1461 710 MobiDBLite consensus disorder prediction 638 680 - -
Dod09g1461 710 ProSiteProfiles Zinc finger PHD-type profile. 405 457 IPR019787 -
Dod09g1461 710 SMART PHD_3 407 455 IPR001965 -
Dod09g1461 710 SMART PHD_3 519 568 IPR001965 -
Dod09g1461 710 SMART PHD_3 571 614 IPR001965 -
Dod09g1461 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 619 IPR013083 -
Dod09g1461 710 PANTHER D4, ISOFORM A 203 698 - -
Dod09g1461 710 PANTHER HISTONE ACETYLTRANSFERASE 203 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1461 Dod-Chr9 35949531 35956470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1461 568 658 C2H2 Transcription Factor Family AT3G01460 34.314 1.97e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod09g1461 PHD 1.7e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1461 - - gmx:100795906 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1421 08 25305419 25323664 Dod09g1461 09 35949531 35956470 PCT