Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1456 ATGGGTTCTGAAAGCATGTTTAGTGCCACAGATCAGCCAAATCTCCTGAAAACCGGAGTACAAAATGCTGATCTGAAAGGGCAAAGGCTAGTTCCACTACCCATTGACACCAAATTGGACAGTAGATCATCCCCATTGGTAGTGAATGTTTCCATTGGTTGCTGTGAGAGTGCAACAGTCCCTAAGAATGTTATAGAAACTAATGATGCGCCACACTCTTCTGAGGATGTGCTGAAGTGTTCTGTAACATTTGAAAATCAAGTTGGTATATCTAATGATGGGGCGAACCAAGTTGAAGTAAATGATGGGAATGACTCTTCTTCAAATGCAAAGAGAACAGTGTATATAAAGCCCAAATCAAATCAATTAGTTGCAACTTCAAATTTTTGTGCTCTTTCTGCTGATGACGTGACCCAAAGAGCCTGCTCTGATGGCTATTACAAGTGTGGCAAAAATCAGTTACTTAGGAATTCATTTGCAAGTCATATCAGCCCAACTGTGATAATGCCCAATAGCAATGTAAATTCTGATGGGCTAGGGGCTTGTAAAGCAATTTGCAGCAGGAGGTTTACCAAGAGGTGGTCACAGAAAGTGGCTGGGAGGTTGTGCAAACCTTTAAAAACCTCATTAGTGTGGACACTTTGTAGCAAAGCTTCACCCAAAAATGACATTGACTCAGGGAATTGTCAAAAGTTTTTGGCTCAGTTGTTTCCATGGAAAAGACCAATATTTTGGAGAAGACTTTGTCAAATTCCTGCTTCAAGCTACAATAGTAGTTCCTTATCTGCCATCAGGTACCTGATAATATGCTACTACTCCTCTAGGTTATATTCTTCTTTTCAATTTTGTTTCCCCTTTGGTTGTGTGCCTCAGCAGTATTCAATTGCAATAGTCAATTACTGTTTGTCTTTTTTCAGCAAGAAATTGCTTCTGTTAAGGAATAGGGATGCTGTTTACCCTAGGTCAACCCATGGGTTTTCTCTTTGGAAAACCAATGTATTAGGTGTTGGTGGATCCAGTTTAAAATGGTCCAAATCCATTTACAGGCGCTCAACAAAGGTTATTGAGGAAGCTACACTTGCTGCTGCTGCAGTGGAGAGGGAAAAGAGGGAACAAAAAGATGTTGTTGGTAAAAGTTCTCAGGCAAAGAATGATGAACCCCTGCCCTCTTCCTCTATCCCATCCGGCTTAGCTGCCAAAGAAGGTTACAATCCAAGCTATGTCCGAATTGGCAATGGAAATCAGCTTATCAGAGACACAAACAAACGAACTCGGATTTTGGCCAACGAAAAAGTTAGATGGAGTTTGCACACAGCTAGACGGCGGCTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTTACTAGATTTGGGAAGTGTAACAAGGATGACGGGAAGTGTCCTTATATTCACGATCCCTCAAAAATTGCTGTCTGTACTAAGTTTCTGAATGGTCTATGTTCTAATGCCAACTGCAAATTGACTCATAAGGTTATTCCGGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGCTTATGCACAAACAGAAACTGTGCATACAGACATGTCAATGTGAATTCTAAGGCTTCTATTTGTGGAGAATTTCTTAAGGGTTATTGTGGCGATGGAAATGAGTGTCGGAAGAAGCACAGCTATGTATGTCCTACCTTCGAAGCAACAGGAAGCTGTACGACGGGAAACAAATGCAAGCTTCATCACCCAAAGAAACAAGGTGAGGGAAGGAAAAGTGAGAGGTCTGGACATCAGAACAACACTGGAAGGCGTTACTTTGGTTCTATTCCCATTGACATTTCTGGACCTGGCATGATGGTTTCTCAAAGGCAATGGCAACAGAGTAATGATAAAGAAGGAGATGTTGCTGACTATATCGGCTTTGAAGTTGATGAAGCAGTTGCAGAATGTGTTGATCAATCATATGAGCTGGCGATAATGTGTGACAGTGATCCCTGGGATTCACAGCTGGATAATCTTGATGAACTTATTAGACCCGTTCTTATAATGAAAAATGATTTTATGGCTCAACCATTTTCAGTACAAAATTACAAATAG 2070 0.4092 MGSESMFSATDQPNLLKTGVQNADLKGQRLVPLPIDTKLDSRSSPLVVNVSIGCCESATVPKNVIETNDAPHSSEDVLKCSVTFENQVGISNDGANQVEVNDGNDSSSNAKRTVYIKPKSNQLVATSNFCALSADDVTQRACSDGYYKCGKNQLLRNSFASHISPTVIMPNSNVNSDGLGACKAICSRRFTKRWSQKVAGRLCKPLKTSLVWTLCSKASPKNDIDSGNCQKFLAQLFPWKRPIFWRRLCQIPASSYNSSSLSAIRYLIICYYSSRLYSSFQFCFPFGCVPQQYSIAIVNYCLSFFSKKLLLLRNRDAVYPRSTHGFSLWKTNVLGVGGSSLKWSKSIYRRSTKVIEEATLAAAAVEREKREQKDVVGKSSQAKNDEPLPSSSIPSGLAAKEGYNPSYVRIGNGNQLIRDTNKRTRILANEKVRWSLHTARRRLARKQKYCQFFTRFGKCNKDDGKCPYIHDPSKIAVCTKFLNGLCSNANCKLTHKVIPERMPDCSYFLQGLCTNRNCAYRHVNVNSKASICGEFLKGYCGDGNECRKKHSYVCPTFEATGSCTTGNKCKLHHPKKQGEGRKSERSGHQNNTGRRYFGSIPIDISGPGMMVSQRQWQQSNDKEGDVADYIGFEVDEAVAECVDQSYELAIMCDSDPWDSQLDNLDELIRPVLIMKNDFMAQPFSVQNYK* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1456 689 Gene3D - 526 587 - -
Dod09g1456 689 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3 18 676 - -
Dod09g1456 689 ProSiteProfiles Zinc finger C3H1-type profile. 499 525 IPR000571 GO:0046872
Dod09g1456 689 PANTHER CCCH ZINGC FINGER 18 676 - -
Dod09g1456 689 Coils Coil 355 375 - -
Dod09g1456 689 SMART c3hfinal6 553 575 IPR000571 GO:0046872
Dod09g1456 689 SMART c3hfinal6 499 524 IPR000571 GO:0046872
Dod09g1456 689 SMART c3hfinal6 473 497 IPR000571 GO:0046872
Dod09g1456 689 SMART c3hfinal6 526 552 IPR000571 GO:0046872
Dod09g1456 689 SMART c3hfinal6 444 472 IPR000571 GO:0046872
Dod09g1456 689 Gene3D - 471 525 - -
Dod09g1456 689 MobiDBLite consensus disorder prediction 371 397 - -
Dod09g1456 689 ProSiteProfiles Zinc finger C3H1-type profile. 444 473 IPR000571 GO:0046872
Dod09g1456 689 MobiDBLite consensus disorder prediction 572 594 - -
Dod09g1456 689 ProSiteProfiles Zinc finger C3H1-type profile. 526 553 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1456 Dod-Chr9 35908097 35911888 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod09g1456 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1456 - - ahf:114924304 761.911