Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1426 ATGCACAATGTTGATGTCAATGACCTGGACGACAGAATAAGAGAGCATCTAGCTGAAAATCATTGCAACTGTTGCTCCTGTCCTCTTCCTGCTGTATACTATCAGTCACAAAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTCACTGGACATTCAAGTATAGATTTTATAAGGGTGGATTCATCGAGGGATTATGGTGAGGTAGATGGGGATAGTTGGAATGATCAAGAAACTTTGCTGTTGCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGGACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTTCGTCTACCAATGGAAGAGGGAAAATTGGAAAATATCAATGTTCCGGGCATGTTTTTGTCATCCAATGTGATGAATAGAAATGATAGTGGAAGATCACGTGGTTACTTAAATGGAGATTCTGCAGGGACTGTCCATCAAAGCAGAGATTCTGACAGCAGGCTTCCTTTTGCAAATTCTGGAAATCCTGTTATGTCTTTGGTTGCCTTTTTAGCCTCTGCGGTTGGACCAAGAGTAGCTGCTTCTTGTGCCCATGCAGCATTAGCAGTATTGTCTGAGGATAATTCTGGCAGCACATCTCAGATGGAAGCACTAGGACATGATAATAGGGCAAATTCAGAAGGCACACATAGTAGAGATGTTGGTCCTCAGGGAGATACTTCAACTTCAAATAATCATAATGAGGATAAGGCAAAAGTGCATGGTTCACGGGGTCAAAATGAAGGCGGGACAACCCCACTATCTACTGAGAAAGTTAAAGATGCAGCTCAGGCAGGCCTCTCTGCTGCAGCCATGAAAGCTAAATTGTTTGCTGATCATGAAGAACGAGAAATTCAGAGGCTATGTGCTAATATCGTTAATCATCAGTTGAAAAGATTGGAATTGAAGCTGAAGCAGTTTGCAGAAATTGAAACACTATTGATGAAAGAATGCGAACAGGTTGAAAGGGCAAGGCAGAGGTTTGCTGCTGAACGGACCCGTGTTATCTCGGCTCGACTTGGAACTGGAGGAGCCACTTCTCCAATGAATGCATCAGGTGTTGGCCCTTCCATGGCCAGCAGTAATGGCAACAGTAGGCAACAAATGATCTCTGCTTCTCCCTCACAGCCAAGCATCTCAGGGTATGGCAACAACCAACCAGCTCATCCACAAATGTCCTTTGCCCCAAGACATTCTATGTTTGGGTTGGGGCAAAGATTGCCCCTTTCTATGATACAACAATCTCAATCAACTTCTTCAAATGCCATGTTCAATGCCCCGAGTAATGTGCAGCCCACTACCAATCATCCATTGTTGAGGCCAGTATCAGGGACTAACTCTGGTTTAGGTTAA 1407 0.4321 MHNVDVNDLDDRIREHLAENHCNCCSCPLPAVYYQSQKEVDILLCTDCFHDGRFVTGHSSIDFIRVDSSRDYGEVDGDSWNDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEEGKLENINVPGMFLSSNVMNRNDSGRSRGYLNGDSAGTVHQSRDSDSRLPFANSGNPVMSLVAFLASAVGPRVAASCAHAALAVLSEDNSGSTSQMEALGHDNRANSEGTHSRDVGPQGDTSTSNNHNEDKAKVHGSRGQNEGGTTPLSTEKVKDAAQAGLSAAAMKAKLFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQVERARQRFAAERTRVISARLGTGGATSPMNASGVGPSMASSNGNSRQQMISASPSQPSISGYGNNQPAHPQMSFAPRHSMFGLGQRLPLSMIQQSQSTSSNAMFNAPSNVQPTTNHPLLRPVSGTNSGLG* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1426 468 CDD SANT 79 121 IPR001005 -
Dod09g1426 468 Pfam SWIRM-associated region 1 283 358 IPR032451 -
Dod09g1426 468 MobiDBLite consensus disorder prediction 361 404 - -
Dod09g1426 468 PANTHER SWI/SNF COMPLEX-RELATED 36 467 - -
Dod09g1426 468 MobiDBLite consensus disorder prediction 430 468 - -
Dod09g1426 468 Gene3D - 76 126 - -
Dod09g1426 468 MobiDBLite consensus disorder prediction 226 274 - -
Dod09g1426 468 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Dod09g1426 468 MobiDBLite consensus disorder prediction 148 175 - -
Dod09g1426 468 SMART sant 76 124 IPR001005 -
Dod09g1426 468 SUPERFAMILY Homeodomain-like 77 130 IPR009057 -
Dod09g1426 468 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 36 467 - -
Dod09g1426 468 MobiDBLite consensus disorder prediction 234 249 - -
Dod09g1426 468 ProSiteProfiles Zinc finger ZZ-type profile. 16 71 IPR000433 GO:0008270
Dod09g1426 468 Pfam Myb-like DNA-binding domain 79 121 IPR001005 -
Dod09g1426 468 MobiDBLite consensus disorder prediction 359 404 - -
Dod09g1426 468 Coils Coil 296 316 - -
Dod09g1426 468 ProSiteProfiles SANT domain profile. 75 126 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1426 Dod-Chr9 35673552 35676426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1426 22 118 EF-hand Containing Proteins AT3G07740 34.906 1.02e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod09g1426 SWIRM-assoc_1 5.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1426 K11649 - gmx:100780440 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1402 08 23529101 23536099 Dod09g1426 09 35673552 35676426 PCT