Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1411 ATGGCTGAGACGATCTCTCTCTCCCCCATGGACATCGACGGTGACGACCGCACTTACTCAGCCAAGAACGACAAGGGCAAGAGCGTCCTCGTCGCCAGCGCCGACGGCAAGGCCACTCCGTGGGTCGAGAAGTACCGCCCTCAGTCCCTCGACGACGTCGCCGCTCACCGTGACATCGTTGACACCATTGATAGGCTGACCACCGAGAACAGATTGCCTCACCTTCTATTGTATGGCCCTCCTGGCACGGGCAAAACTTCAACTATACTTGCTGTGGCACGCAAGCTGTATGGTGTGCAATACCACAATATGATTTTGGAGCTCAACGCATCTGATGATAGAGGAATTGATGTTGTACGGCAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTGAAGTCCTCTGTAAAATTGGTCTTGTTAGACGAAGCAGATGCCATGACCAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGTACTAGATTTGCGCTCATCTGTAATCATGTAAATAAGATTATTCCAGCTCTGCAATCAAGATGCACGCGGTTTCGGTTTGCCCCTCTTGATGATGTCCATGTCACCGACAGACTGAAACATGTTATTAAGTCTGAAGGGCTTGATGTTCAAGACAGTGGTTTAGCTGCACTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAACATTCTTCAGTCAACACATATGGCTTCTCAGCAGATAACAGAAGACGCTGTTTACCTGTGCACTGGAAATCCATTGCCCAGAGATATCGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGTTTTAAAAGAATACATGAAATGAAGACAAGGAAGGGATTGGCCCTGGTAGATATTGTGAGAGAAGTGACAATGTTTGTGTTCAAGATTAAGATGCCTCCAGCTGTCCGAGTACAGTTGATTAATGATTTGGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAATGACAAGCTTCAGCTTGGATCGGTAATTGCTTCTTTTACACATGCTAGATCTGCACTGGTTGCAGCTGCCAAATAA 1089 0.4545 MAETISLSPMDIDGDDRTYSAKNDKGKSVLVASADGKATPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGVQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDDVHVTDRLKHVIKSEGLDVQDSGLAALVRLSNGDMRKALNILQSTHMASQQITEDAVYLCTGNPLPRDIEQISYWLLNEQFADSFKRIHEMKTRKGLALVDIVREVTMFVFKIKMPPAVRVQLINDLADIEYRLSFGCNDKLQLGSVIASFTHARSALVAAAK* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1411 362 Pfam Replication factor C C-terminal domain 263 349 IPR013748 -
Dod09g1411 362 SMART AAA_5 71 201 IPR003593 -
Dod09g1411 362 SUPERFAMILY post-AAA+ oligomerization domain-like 263 353 IPR008921 GO:0003677|GO:0006260
Dod09g1411 362 Gene3D - 201 262 - -
Dod09g1411 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 257 IPR027417 -
Dod09g1411 362 Pfam ATPase family associated with various cellular activities (AAA) 75 195 IPR003959 GO:0005524|GO:0016887
Dod09g1411 362 Gene3D - 33 197 IPR027417 -
Dod09g1411 362 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 35 358 - -
Dod09g1411 362 CDD AAA 59 197 - -
Dod09g1411 362 CDD HLD_clamp_RFC 198 260 - -
Dod09g1411 362 Gene3D - 263 360 - -
Dod09g1411 362 PANTHER REPLICATION FACTOR C SUBUNIT 5 35 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1411 Dod-Chr9 35443595 35448390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1411 8 362 Core DNA Replication Machinery Family AT1G77470 78.904 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1411 K10756 - gmx:100805231 634.409