Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1409 ATGGCACGTGAGGAGGACAAACAATCTTCACACAAAACCCCATACACTGAACTTGAGCAAGTTAACTTTGATTTTATTCTGGCAATTAGCATGCAAGAACAAGATGGTATGTTCACAACGCTAGAATCTATTGAAAGCGAAAGTGATGATGAAGATATGAGTGATACCTCCTCTGAAGATGATGATGATGATTCTGATTCTGATTTTTCTGAAAGCCAAGAGTTTGAGACCGAACCTCATCAGTTCCTTGAAGGTGAAGGGAGCAATTATGACGAAGAAATGGAAATAGAAGAAGATGAGATTGATCCAGATGAATTATCTTATGAACAGTTGATTGAGTTGGGGGAGATCATAGGAGAGGAAACGAGAGGGTTATCAGCAAATGAAATCTCCTCATGCTTATACCCTTACAATTGCCAGCAATCTGCTCAAAGCAAAAGTGGAATTGACCGATGTGTGGTTTGTCAGGTTGAATATGAAGAAGGTGAAACCGTGGTGGCACTTCAATGTAAGCACCCTTTTCATGCAGATTGCATAAGCACGTGGCTTCAAATTAAGAAGATCTGTCCAATATGTAGCAATGAAATTTCAGCTCCCAAGATGGCTAACAAACCTTGA 618 0.3997 MAREEDKQSSHKTPYTELEQVNFDFILAISMQEQDGMFTTLESIESESDDEDMSDTSSEDDDDDSDSDFSESQEFETEPHQFLEGEGSNYDEEMEIEEDEIDPDELSYEQLIELGEIIGEETRGLSANEISSCLYPYNCQQSAQSKSGIDRCVVCQVEYEEGETVVALQCKHPFHADCISTWLQIKKICPICSNEISAPKMANKP* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1409 205 SMART ring_2 152 192 IPR001841 -
Dod09g1409 205 MobiDBLite consensus disorder prediction 44 72 - -
Dod09g1409 205 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 201 IPR033276 GO:0004842|GO:0016567|GO:0046621
Dod09g1409 205 MobiDBLite consensus disorder prediction 73 87 - -
Dod09g1409 205 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 201 - -
Dod09g1409 205 Pfam Ring finger domain 151 192 IPR001841 -
Dod09g1409 205 SUPERFAMILY RING/U-box 151 199 - -
Dod09g1409 205 MobiDBLite consensus disorder prediction 37 91 - -
Dod09g1409 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 199 IPR013083 -
Dod09g1409 205 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1409 Dod-Chr9 35426652 35427673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1409 98 196 C3H Transcription Factor Family AT3G63530 45.000 1.03e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1409 K19045 - gmx:100526881 236.498