Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1379 ATGTCTCTGAGCCCTCCAAGAGAGAGAAGGAATGGAGAAGCGAGGACGTTCCAGCTGTGCTGGTGCTTCCAGTGCAACCGCATGGTCCGCGTGGCTCCTGATAACCCCACCTCCATCACGTGCCCGCGCTGCTTCGGTCAATTCCTCATCGAAATAGACATGCCAACTCCCAGGCTCTTCCTCGACTTCACCAACCACGACCCTTCCCCAGAAGCCCGTTTGCTCGAAGCACTTTCCCTCATCCTCGAACCCCCCATCCGCCGCATCCCCAGTGACCACGACGACCACCGCCGCCGCCGCCATCGTCCCCGACCCCAAGGCTCGGAACCCGAACCTGCAGGGACCCAGCCCCGTCCCCGAACCTGGATCATTCTCCAACCCATCGGCGGCGACCCTTCCTCCAACCCCTTGTTTCCGAGGCGAGAGGGTCCAGTCCCAATCCCACGTGGCGTGGACCCTCGGGACTACTTCTTGGGGCCTGGGCTTAACGATCTGATCGAGCAGCTGACGGAGAATGACAGGCCAGGGCCGGCGCCGGCGCCGGAGAGGACCATCAACGGGATACCCACGGTGAAGATCGACAGCGGTCACTTGAAGGAGAATTCGCAGTGTCCGGTTTGTCAGGAGGAGTTTGAGGTTGGTGGAGAAGCCATGGAGCTTCCATGCAAGCACGTGTACCATTCCGGTTGCATTGTTCCATGGCTCAGGCTTCATAATTCTTGCCCTATTTGCCGCCTCGAGGTGCCAGTTTCGGAGGAGGATGAGGAAGATGGGTGTACTGAAGAAGAAGGTGGTGGTAGGTTTCGGAGGTGTTGGAGGTGGACGTCACGCGGAATCGCTTCTCTTTGGCCTTTCCATGGAAGGCATCGACGTGTTCATGCTGAAGATCGTGCAGGGAGAGGGACTGACAATGTTTCTGCCGCTTCTTCTTCTTCTTCTTCAAGGGCGGCTGACTCAAGTCAACGCTCTTGCTGCATTCTTTAA 984 0.5833 MSLSPPRERRNGEARTFQLCWCFQCNRMVRVAPDNPTSITCPRCFGQFLIEIDMPTPRLFLDFTNHDPSPEARLLEALSLILEPPIRRIPSDHDDHRRRRHRPRPQGSEPEPAGTQPRPRTWIILQPIGGDPSSNPLFPRREGPVPIPRGVDPRDYFLGPGLNDLIEQLTENDRPGPAPAPERTINGIPTVKIDSGHLKENSQCPVCQEEFEVGGEAMELPCKHVYHSGCIVPWLRLHNSCPICRLEVPVSEEDEEDGCTEEEGGGRFRRCWRWTSRGIASLWPFHGRHRRVHAEDRAGRGTDNVSAASSSSSSRAADSSQRSCCIL* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1379 327 CDD RING-H2_RNF126_like 203 245 - -
Dod09g1379 327 Pfam zinc-ribbon 20 52 IPR039525 GO:0061630
Dod09g1379 327 MobiDBLite consensus disorder prediction 86 119 - -
Dod09g1379 327 Pfam Ring finger domain 203 245 IPR001841 -
Dod09g1379 327 PANTHER - 10 261 - -
Dod09g1379 327 SMART ring_2 204 244 IPR001841 -
Dod09g1379 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 261 - -
Dod09g1379 327 ProSiteProfiles Zinc finger RING-type profile. 204 245 IPR001841 -
Dod09g1379 327 MobiDBLite consensus disorder prediction 294 327 - -
Dod09g1379 327 SUPERFAMILY RING/U-box 184 251 - -
Dod09g1379 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 251 IPR013083 -
Dod09g1379 327 MobiDBLite consensus disorder prediction 303 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1379 Dod-Chr9 35147496 35149502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1379 176 293 C3H Transcription Factor Family AT1G68180 42.276 1.17e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1379 K11982 - gmx:100787399 362.459