Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1370 ATGGCGGAGATTCGGAGATCTACAGGCACAGTGAAATGGTTCAACGCGCAGAAGGGTTTCGGATTCATAGCTCCCGACGACGGCGGCGAGGATCTCTTCGTCCACCACACTTCCATCCGATCCGACGGCTACCGGACCCTCTCGGAAGGCCAGCAGGTGGAGTTCGTCGTTGATTACGGCGACTCCGGGAGAACTAAGGCTGTCGACGTCACGTCCATGGCTAGATCTCGCCGTTTTGGTGGTTTTCGCGGCGGCGGCGGAGGCGGCAGAGGAGGTGGCCGGTACGGCGGGCGCTATGGCGGCGGTGAAGGCCGCAGCGACGGTTACGGTTACGGTTACGGGTACGTGTACGGTAGAGGCGGAGGGGGTGGTCGGAGAGGAGGAGGAGGTTACGGCGGGGGTGGAGGTGGCGGATATGGTGGTGGTGGTGGTGGAGGACCTGAGTGTTACAATTGTGGACGAATTGGTCACTTGGCGAGAGATTGTTACCACGGACAAGGTGGTGCTGGTGGCGGGAATCGGAGGCGCGGCAGTGGTAGTGGTGGCAGCAGTGGTTGTTTTAACTGTGGGGAGGAAGGGCATTTTGCGAGGGAATGTCCCAATGTTGAAAAATGA 615 0.6 MAEIRRSTGTVKWFNAQKGFGFIAPDDGGEDLFVHHTSIRSDGYRTLSEGQQVEFVVDYGDSGRTKAVDVTSMARSRRFGGFRGGGGGGRGGGRYGGRYGGGEGRSDGYGYGYGYVYGRGGGGGRRGGGGYGGGGGGGYGGGGGGGPECYNCGRIGHLARDCYHGQGGAGGGNRRRGSGSGGSSGCFNCGEEGHFARECPNVEK* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1370 204 Gene3D - 131 170 - -
Dod09g1370 204 SUPERFAMILY Nucleic acid-binding proteins 5 72 IPR012340 -
Dod09g1370 204 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Dod09g1370 204 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Dod09g1370 204 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Dod09g1370 204 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 202 - -
Dod09g1370 204 ProSiteProfiles Zinc finger CCHC-type profile. 186 201 IPR001878 GO:0003676|GO:0008270
Dod09g1370 204 ProSiteProfiles Zinc finger CCHC-type profile. 149 162 IPR001878 GO:0003676|GO:0008270
Dod09g1370 204 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Dod09g1370 204 Pfam Zinc knuckle 148 162 IPR001878 GO:0003676|GO:0008270
Dod09g1370 204 Pfam Zinc knuckle 185 201 IPR001878 GO:0003676|GO:0008270
Dod09g1370 204 SMART c2hcfinal6 185 201 IPR001878 GO:0003676|GO:0008270
Dod09g1370 204 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Dod09g1370 204 PANTHER COLD SHOCK PROTEIN 1 3 202 - -
Dod09g1370 204 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Dod09g1370 204 SUPERFAMILY Retrovirus zinc finger-like domains 141 201 IPR036875 GO:0003676|GO:0008270
Dod09g1370 204 Gene3D - 172 204 - -
Dod09g1370 204 SMART csp_8 8 73 IPR011129 GO:0003676
Dod09g1370 204 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Dod09g1370 204 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Dod09g1370 204 Gene3D - 1 71 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1370 Dod-Chr9 35016547 35018848 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Dod09g1370 CSD 4.3e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1370 - - pda:103701257 145.206