Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1359 ATGGCACAAACGCTCGCAATTGCAATGCCCGTGGCTCCCTCTCTCGCTCTCATCTCCAATTCCAATTCCAATTCCCTTTCTAGAACCGTCTCCTTTCCCGTTCTCACTCCTCCCAAGGCTAATGGTCTAAGCATCCAGTGTGTTCGTGTTGGTGGTGTAGAGATTCCAAACAACAAGCGAATTGAGTTCTCACTGCAGTACATTCACGGAATTGGGAGGAGCAGAGCTCGCAAGATCCTGTGTGATATCAACATGGACAACAAAATCACCAAGGAACTCAGTGAGGAGGAACTCATCACTCTCAGGGATGAAGTCTCCAAATTCATGATTGAAGGCGACCTCAGGCGGTTTAATGCACTTAATATAAGGAGGCTGAAGGAGATACAGTGCTACAGAGGAATAAGGCATATTCAGGGGCTTCCCTGCAGAGGACAGCGTACCAAGAACAATTGCAGGACATTGAAGGGTAAGAAGGTTGCCATTCCTGGTAAAAAGAAGAAGTAA 504 0.4702 MAQTLAIAMPVAPSLALISNSNSNSLSRTVSFPVLTPPKANGLSIQCVRVGGVEIPNNKRIEFSLQYIHGIGRSRARKILCDINMDNKITKELSEEELITLRDEVSKFMIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKK* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1359 167 SUPERFAMILY S13-like H2TH domain 48 159 IPR010979 GO:0003676
Dod09g1359 167 ProSitePatterns Ribosomal protein S13 signature. 132 145 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod09g1359 167 Gene3D 30s ribosomal protein s13, domain 2 117 167 IPR027437 -
Dod09g1359 167 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 166 - -
Dod09g1359 167 Gene3D - 48 116 - -
Dod09g1359 167 Pfam Ribosomal protein S13/S18 107 153 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod09g1359 167 ProSiteProfiles Ribosomal protein S13 family profile. 50 156 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod09g1359 167 Hamap 30S ribosomal protein S13 [rpsM]. 47 163 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod09g1359 167 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 1 166 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod09g1359 167 TIGRFAM uS13_bact: ribosomal protein uS13 49 158 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1359 Dod-Chr9 34850382 34851620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1359 46 165 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 33.562 2.93e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1359 K02952 - gmx:100499902 239.965