Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1351 ATGCTCTCGATTTTGTTCACCTTGTTGTTACCGGCGATGACCGGTGGTGGCCGATGTCTCCGGCGGAAGAACATGGCGGCTTCCGGCGCACAACAAAGGGAACGAGGCTCCGCCGAGGAGAGGCCGCCGTCGCCGGCGATTTCTCCGGTCACTCCGCCGGGAAACTCGACGGCGTTCGAAATTGACTACTTTTCGCAGGCGAGGAAGGCGCTGAGCGAGCGCTCGCCGTTTGACGAAGAAGCGTCGACTTCCGGCGGAGCGGTTACTACTCTGCCGAGTGGGCTGGCGGGTTTGTTGAACCGCCAAGGCGGGGATAGCCGGCGGCGGCACAAGAAGTCTCACTCCGGCGGCGAGAAGAAGAAGAAGAAGAAGTCGTCGAGGGCGAATGAGAAGTCGCGCGCTTCCAACATTTGGGTTGAGACGGAGGAGTATTTTAGGGACTTGACGTTATCTGATATCGACACATTGGTGGAGGCTTCTTCATTGTCTAGTTTAGGTTCTCGTGAGTGTTTCTTGATTCCTAGACTCAATGTCGTTAGTGCTAGTGAGGTAGAAAAGAAGGGTGGTTCCAGAATTGAAGTAGGTAATGGTGAGCATGAGAAGAAGGGTGATGAAGAAGTGAGAAATGAGGAGTGTTTATTGGGAATTGAGTCAATGGACAATGTTGCTGATGAAAAAGATTTCCCTGAGGAGGATTACAAGAATGGTTCTTGTGATAGTTTAGAGTGGCTTTTTGGTTGTAGGAGTAAGGTTTCTTTAGCTTCTGAGCGCCCTACGAAGAAAAGAAAGCTTTTGGGTGGGGATGCTGGCTTGCAGAAAGTTCTAATGACTAGTCCTTGTGATGGGGTGCAACCCTTTTGTCATTATTGTGGCAGGGGTGACACTGGCAGAGATTCGAATCGGTTAGTGGTCTGTGCTTCTTGTAAAGTTGCAGTTCATCAGAAGTGCTATGGTGTGCAAGATGGCTTGGATGAGTCTTGGTTGTGCTCCTGGTGTAAGGAAAAGGGTGGTGTTGACGAGTCAGTGAATCCTTGTGTGCTATGCCCAAAGAAAGGTGGCGCTCTGAAACCAGTTAGTGGCACTGTGGAAGGTGCTGGGTCTGTGGAGTTTGTGCACTTGTTTTGTGGTCTGTGGATGCCCGAGGTTTATATAGATGATTTGAAGAAGATGGAGCCTGTTATGAATGTGGAAGGAATCAAGGAAACCCGGAGAAAATTAGTCTGTAATGTTTGCAAATTGAAGTCGGGTGCATGTGTTCGATGTAGCCATGGATCCTGCAGGACTTCTTTCCACCCTTTATGTGCAAGAGAAGCTAGACATAGGATGGAGGTTTGGGCAAAGTATGGTGATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATCTACAAGATAACAGGAGCATCTTGCCATCAGGAGACTCTGTTGCTGTTGGCAGCGAATTTTCTGAAGCTAATGGGCTTCCACTGACATCGCCAGTGAATAGTGAACACAATTTGAAAATTGGTTGCAGAAATGGAGTAACAACTATTAGTGGTCTAGACAAGTTGAACCATAATGAACTACCAGATGGAGGATTGTCTGATTGTGGTGTAAGTGCCCACGACATGTTGGGGTGTGGTGCTGTGCAGCAGCATAATGATGGAACGGTAGGGAAGAGCAAGGGGAATGTAGATGCTTCTGATTCCCTCAGTTTTGCAGTTGTCTTGAAGAAGTTGATAGATCGGGGGAAAGTTGATGTAAAAGATGTAGCAATGGAGATTGGCATTTCACCAGATACATTAAATGCAAATATCAATGAACCTTATATGAACCCTGATGTGCTTGACAAAATAGTCAAGTGGCTAAAAGCCCATGTATACACTAGTGCATTTCAGAAAGGTTTAAAAGTCAAATTCAAACCACCCAATGCACCCAAGGATCAAAGTAGATCTGCAGATGGTTCTGATACTTTACCAATATCAGATTCAGGTTTGTTGGATCCTGTTGCTGTTAAGTCAGTTCCTCCAAGGAGGAGGACTGTCAGCAACATTAGGATTTTGAAGGACAATAAATTGATATGTTCATCTGAGGGGGTTTCTAGTGAGAATGGGATGTCAATTGACAAGGTCAGTGTTGGTCAGCCAGACCGTGAAAATCCTGGAAGTTCCAATGAAGCATCTCCAGATGCAACTGTGATGAATTTAACCATGTCTGAGGAAATTTTTCCTAAAGTTCAAGTGAATGCTGATAACCCCTTCAAATCCAGCTTGCCTGTATGCGATTCCGAAGAAAAGTCCACTGTTTGTTTGCGGAATGATTCTATGCTTTCTGATCGCCACTGTCCCATTTATTCTGCTTCAGAACTACCTGATTCTGGTTCCATGAAAGCAGAAGCAACCTCTAGTTACATTCACCCATTCATCAACAAGAAATTGCTGCAGATTCATAATGGGGTGCTCTTGGAGGACATTACATGTCCAAGGGAAGAGGGAATTTCTTCTTTGGTTGAATCCTCTGGGTCTAGTGGCTGCTCAAATAGTAAAAATCAGCAATTAACGAGCATTGAAATTTCCAATTCTGACCAAGTAAATATGGAGCAGTTAGATAGGGCTGGAAAGATGGGACTTTTGGAATTTTCTCCAGAAGATGAAGTGGAGGGGGAACTTCTCTATTTACAGTACAGATTATTGCGGAATGCAGTTGCAAGAAAGAGGTTAACTGATAACTTAATCTGCAATGTTGCCAAGAGTTTGCCACATGAGATTGATGCAGCTCATCAGCGAAGATGGGATTCTGTGATTGTTAATCAATATCTCCGCGATCTTAGGGAGGCAAAAAAGCAGGGCAGAAAAGAAAGAAGGCACAAGGAAGCACAGGCAGTGCTAGCTGCTGCAACAGCTGCTGCTGCAGCATCTTCTAGGATTTCTTCTTTCCGAAAAGACTCTTTAGATGAATCTATGCAACAGGAGAATTTGTTAAAGTTGGATTCTTCAAGTGGGAGGTCTGGTGGTGGTTCTCAGCCGATGCCACGAGCCAAAGAGACACTTTCAAGAGCTGCTGTGACGAGAACTTCATCAGAGAAATATTCAGAAAATGGGCTTCCATCTGCGGACTTGTCTAAGGAGCAGGCTAAATCATGTGATATCTGCAGACGATCTGACACTCTGTTAAACCCCATCCTTATCTGCTCTGGTTGCAAGGTTGCGGTTCACTTGGATTGCTATCGTAGTGTGAAAGAAACAACAGGTCCATGGTACTGTGAATTATGTGAAGATTTATCATCTAGAAGCTCTGTGACATCTGCAATCAATTTCTGGGAAAAGCCTTATTTTGTCGCGGAATGTGCTCTCTGTGGTGGTACTTCTGGAGCTTTTAGGAAGTCTTCTGATGGTCAATGGGTTCATGCCTTCTGCGCTGAGTGGGCTTTTGAGTCGACATTCAGAAGAGGACAAATTAATGCTGTTGAAGGAATGCAGACTGTGCTGAAGGGAGTTGATACATGTTGCATCTGCCGCCGCAAGCATGGTGTTTGCATGAAGTGTTGCTATGGCAATTGTCAATCGACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTTTATTTGAATGTGAGGACTGCTGGTGGCAAACCACAGCACAGGGCTTACTGTGAAAAGCATAGTTTAGAGCAGAAGGCAAAGTCTGAAAGTCAAAAACATGGAATTGAAGAGTTCAAAAGTATGAAGCAAATTCGGGTTGAACTGGAGAGACTACGTCTCCTTTGTGAGAGAATTGTCAAACGTGAAAAAATAAAGCGGGAATTAGTTCTCTGTTCACATGACATACTTGCCTTCAAAAGAGATCATGTTGCTAGGTCTGTACTGGTTCGAAACCCTTTCATCCTTCCAGATGTTAGCTCAGAATCAGCTACAACATCCCTTAAAGGTATCACAGATGGGTACAGATCATGCAGCGAAGCAGTTCAAAGATCCGATGACATAACTGTGGACAGCTCAGTTTCTGCTAGGCACCGTGTCAGAGTTACTGTATCCATGGACACTGACTCCAAATTGGACGATGACTGCTCAACCTCACAAAGCCACTATAATCACAATATGCCAGAGAGGATGCAATTTTCTGGCAAGCAGATTCCTCGTAGAGCTTCTGCTATGTCACGCAATCTCTCAGATGTAGGAGGATTGAGATCGAAATCTAGAAAGCATGCAGAGACATTTGGAAAAGAGCTCGTTATGACATCAGATGAAGCATCTATGAAGAACTTGATGTTACCGAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCAAATGATAAGCAGTCTAACGAGGATGAATATGCTGGTGGACCAGTGGAACATGATCGGTAG 4356 0.45 MLSILFTLLLPAMTGGGRCLRRKNMAASGAQQRERGSAEERPPSPAISPVTPPGNSTAFEIDYFSQARKALSERSPFDEEASTSGGAVTTLPSGLAGLLNRQGGDSRRRHKKSHSGGEKKKKKKSSRANEKSRASNIWVETEEYFRDLTLSDIDTLVEASSLSSLGSRECFLIPRLNVVSASEVEKKGGSRIEVGNGEHEKKGDEEVRNEECLLGIESMDNVADEKDFPEEDYKNGSCDSLEWLFGCRSKVSLASERPTKKRKLLGGDAGLQKVLMTSPCDGVQPFCHYCGRGDTGRDSNRLVVCASCKVAVHQKCYGVQDGLDESWLCSWCKEKGGVDESVNPCVLCPKKGGALKPVSGTVEGAGSVEFVHLFCGLWMPEVYIDDLKKMEPVMNVEGIKETRRKLVCNVCKLKSGACVRCSHGSCRTSFHPLCAREARHRMEVWAKYGDDNVELRAFCLKHSDLQDNRSILPSGDSVAVGSEFSEANGLPLTSPVNSEHNLKIGCRNGVTTISGLDKLNHNELPDGGLSDCGVSAHDMLGCGAVQQHNDGTVGKSKGNVDASDSLSFAVVLKKLIDRGKVDVKDVAMEIGISPDTLNANINEPYMNPDVLDKIVKWLKAHVYTSAFQKGLKVKFKPPNAPKDQSRSADGSDTLPISDSGLLDPVAVKSVPPRRRTVSNIRILKDNKLICSSEGVSSENGMSIDKVSVGQPDRENPGSSNEASPDATVMNLTMSEEIFPKVQVNADNPFKSSLPVCDSEEKSTVCLRNDSMLSDRHCPIYSASELPDSGSMKAEATSSYIHPFINKKLLQIHNGVLLEDITCPREEGISSLVESSGSSGCSNSKNQQLTSIEISNSDQVNMEQLDRAGKMGLLEFSPEDEVEGELLYLQYRLLRNAVARKRLTDNLICNVAKSLPHEIDAAHQRRWDSVIVNQYLRDLREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLDESMQQENLLKLDSSSGRSGGGSQPMPRAKETLSRAAVTRTSSEKYSENGLPSADLSKEQAKSCDICRRSDTLLNPILICSGCKVAVHLDCYRSVKETTGPWYCELCEDLSSRSSVTSAINFWEKPYFVAECALCGGTSGAFRKSSDGQWVHAFCAEWAFESTFRRGQINAVEGMQTVLKGVDTCCICRRKHGVCMKCCYGNCQSTFHPSCARSAGFYLNVRTAGGKPQHRAYCEKHSLEQKAKSESQKHGIEEFKSMKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVRNPFILPDVSSESATTSLKGITDGYRSCSEAVQRSDDITVDSSVSARHRVRVTVSMDTDSKLDDDCSTSQSHYNHNMPERMQFSGKQIPRRASAMSRNLSDVGGLRSKSRKHAETFGKELVMTSDEASMKNLMLPKGYAYVPADCLSNDKQSNEDEYAGGPVEHDR* 1452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1351 1451 MobiDBLite consensus disorder prediction 1014 1033 - -
Dod09g1351 1451 MobiDBLite consensus disorder prediction 634 657 - -
Dod09g1351 1451 MobiDBLite consensus disorder prediction 693 725 - -
Dod09g1351 1451 SUPERFAMILY FYVE/PHD zinc finger 1038 1087 IPR011011 -
Dod09g1351 1451 SMART PHD_3 407 463 IPR001965 -
Dod09g1351 1451 SMART PHD_3 1042 1087 IPR001965 -
Dod09g1351 1451 SMART PHD_3 286 333 IPR001965 -
Dod09g1351 1451 SMART PHD_3 1163 1217 IPR001965 -
Dod09g1351 1451 MobiDBLite consensus disorder prediction 24 57 - -
Dod09g1351 1451 ProSiteProfiles Zinc finger PHD-type profile. 1040 1089 IPR019787 -
Dod09g1351 1451 ProSiteProfiles Extended PHD (ePHD) domain profile. 342 463 IPR034732 -
Dod09g1351 1451 Coils Coil 1237 1257 - -
Dod09g1351 1451 MobiDBLite consensus disorder prediction 990 1033 - -
Dod09g1351 1451 ProSiteProfiles Extended PHD (ePHD) domain profile. 1108 1217 IPR034732 -
Dod09g1351 1451 ProSitePatterns Zinc finger PHD-type signature. 1043 1086 IPR019786 -
Dod09g1351 1451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 336 IPR013083 -
Dod09g1351 1451 Pfam PHD-zinc-finger like domain 344 462 - -
Dod09g1351 1451 Pfam PHD-zinc-finger like domain 1110 1216 - -
Dod09g1351 1451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1108 1218 IPR013083 -
Dod09g1351 1451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 465 IPR013083 -
Dod09g1351 1451 MobiDBLite consensus disorder prediction 1430 1451 - -
Dod09g1351 1451 MobiDBLite consensus disorder prediction 72 134 - -
Dod09g1351 1451 ProSitePatterns Zinc finger PHD-type signature. 287 332 IPR019786 -
Dod09g1351 1451 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 234 471 - -
Dod09g1351 1451 Coils Coil 935 955 - -
Dod09g1351 1451 ProSiteProfiles Zinc finger PHD-type profile. 284 335 IPR019787 -
Dod09g1351 1451 Pfam PHD-finger 300 333 - -
Dod09g1351 1451 Pfam PHD-finger 1054 1087 - -
Dod09g1351 1451 PANTHER PHD FINGER PROTEINS 645 1440 - -
Dod09g1351 1451 MobiDBLite consensus disorder prediction 105 128 - -
Dod09g1351 1451 CDD ePHD 1111 1216 - -
Dod09g1351 1451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1016 1097 IPR013083 -
Dod09g1351 1451 PANTHER PHD FINGER PROTEINS 234 471 - -
Dod09g1351 1451 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 645 1440 - -
Dod09g1351 1451 SUPERFAMILY FYVE/PHD zinc finger 278 350 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1351 Dod-Chr9 34749558 34760458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1351 281 435 C2H2 Transcription Factor Family AT3G14740 32.278 1.59e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod09g1351 zf-HC5HC2H_2 1.1e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1351 - - aip:107606101 2043.08