Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1347 ATGCCTCGCAGAGTGCCGCCGCGGTCGCCGCCGCAGCCAAGCCGTGTAACCGCCAAAATCTGGCGGGCCTGCGCCGGAATCACAGTGCAGACCCCAATGCTACACTCTAGGGTCTACTACTTCCCGCAGGGGCACGTCGACCAGGCCTCTTCGCCACCGCGGAACCTCTCCCCTCTCGTCCACTCCAGGCCCTACATCCTCTGCCGCGTAACCGCCGTCGAATTCTTCGCCGATCCTCACACCGACGAAGTCTTCACCAAGCTCCTCCTCCAACCAATCGCCCCTACTCACCCGCTTCTTCCCTCCGATCCCGCTGCCGCCGCCGGGAATGCTCCCGGAGAGGCTCCTCCCGCCGACGATGACGGCGACAAGATTGAGTCCTACGCCAAGACTCTGACGCCGTCCGACGCCAATAACGGCGGCGGGTTCTCCGTCCCGAGGTTCTGCGCGGAGTCGATCTTCCCGCCGCTGAACTTCAACGACGACCCGCCGGTGCAGCAGCTCTCCGTCACAGACGTCCACGGCGTGACCTGGGAATTCCGCCACATCTACCGTGGCACGCCGCGGCGCCACCTACTCACCACGGGCTGGAGCAAGTTCGTCAACAGCAAGAAGCTGGTCGCCGGCGACTCCGTCGTCTTCATGAAGAACTCCGCCGGGAGGATGTTCGTCGGGATCCGCCGAGCCGTCCGGCTAGACGCCTCCACGAGCGGCGGAGGCGACCACGATATGCCAGATTGGCTGGCGGAGATCGTTGGATTGCCGAGCAACGCCGTGGAGGAGAAGAAGGAGGAGGAGGAGGAGGAGGGTGAGGAAGAGGAGGGGTTCACCCGGAACGGGAAGGGGAGGGTGTCGGCGAAGGCGGTGGCGGAGGCGATGGAGGCGGCGGCGCAGAACAGGCCGTTCGAGGTGGTCTACTATCCTCGGGTTGGGTGGTCGGAGTTTGTGGTGAGTGCGGAGGCTGTGGACCAAGCCATGAGCCTGATGTGGGGTCCCGGGTTGAGGGTGAAGATGGCGAAGGAGAGTGAGGACTCCTCAAGGGTGACGTGGCATCAGGGCACTGTGGCTTCCGTTTCTGCTAATGATAACGGCCCATGGCGGGGTTCTCCTTGGCGCATGCTTCAGATTTCCTGGGATGAACCTGAATCCTTGAAGAATGCCCAGTCAGTCAGCCCGTGGCAGGTCCAACTCCTTTCTTCCCCACCTTCACTTCACGAAGCATTTCCCCCGACAAAGAAGTTCAGAGCTGCTGAGGATGGAGAGGGAGACCCCTTCTTTCCTTTCACAGGATTCTCTAATTCTACAATGGCACAATTGAATCAAACCTTGTTGAGTTTTGGTACCTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCTACTTTTCCCAGCTTTTCGAGTAATAACTCTCCTCTGTATATGGGTAATTCCTTTGGGAACAACACAGTACCAAGGTTTCATACTAGGCCCACAGAGCTAAACATTGGCTGTTCTCATTCTGACGGCTTGTCACCAGATAGCCAGAGTAGTTTGCGTTCCTCTGGAGCAGAAGTTGTCGGGACCAGCAACAGCAACAGCAACTCAGTGAAAGCTGGGTCTGGTTCATTTCAGCTATTTGGTGCGACCATTCAAACAGAACAGCCGGGTGAAGGTGGTGTGCATGGTATTGGTGGCACAGGGGATGATAACAGTAGAGGCTGCAATGGAACTGAAGGCATTAGCAACCCAATTGCTGATTCTTTGTCTTACTCCAAATTGCTTGACAGGCCGCTTGATGACCCGCGCCAAAGAGCCTCAACAGTTTCGGCATGTTTTTTGTGA 1833 0.5794 MPRRVPPRSPPQPSRVTAKIWRACAGITVQTPMLHSRVYYFPQGHVDQASSPPRNLSPLVHSRPYILCRVTAVEFFADPHTDEVFTKLLLQPIAPTHPLLPSDPAAAAGNAPGEAPPADDDGDKIESYAKTLTPSDANNGGGFSVPRFCAESIFPPLNFNDDPPVQQLSVTDVHGVTWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSVVFMKNSAGRMFVGIRRAVRLDASTSGGGDHDMPDWLAEIVGLPSNAVEEKKEEEEEEGEEEEGFTRNGKGRVSAKAVAEAMEAAAQNRPFEVVYYPRVGWSEFVVSAEAVDQAMSLMWGPGLRVKMAKESEDSSRVTWHQGTVASVSANDNGPWRGSPWRMLQISWDEPESLKNAQSVSPWQVQLLSSPPSLHEAFPPTKKFRAAEDGEGDPFFPFTGFSNSTMAQLNQTLLSFGTFPAGMQGARHDLFSASTFPSFSSNNSPLYMGNSFGNNTVPRFHTRPTELNIGCSHSDGLSPDSQSSLRSSGAEVVGTSNSNSNSVKAGSGSFQLFGATIQTEQPGEGGVHGIGGTGDDNSRGCNGTEGISNPIADSLSYSKLLDRPLDDPRQRASTVSACFL* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1347 610 MobiDBLite consensus disorder prediction 258 282 - -
Dod09g1347 610 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Dod09g1347 610 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677
Dod09g1347 610 MobiDBLite consensus disorder prediction 100 126 - -
Dod09g1347 610 Gene3D - 125 230 IPR015300 -
Dod09g1347 610 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 609 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod09g1347 610 CDD B3_DNA 127 228 IPR003340 GO:0003677
Dod09g1347 610 MobiDBLite consensus disorder prediction 497 531 - -
Dod09g1347 610 Gene3D - 331 402 - -
Dod09g1347 610 PANTHER AUXIN RESPONSE FACTOR 10 609 - -
Dod09g1347 610 Pfam Auxin response factor 292 375 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod09g1347 610 SUPERFAMILY DNA-binding pseudobarrel domain 123 234 IPR015300 -
Dod09g1347 610 SMART B3_2 128 230 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1347 Dod-Chr9 34717001 34720899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1347 15 575 B3 DNA Binding Superfamily AT1G77850 46.749 8.39e-166 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod09g1347 B3 1.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1347 - - aip:107624033 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1311 08 19462199 19468590 Dod09g1347 09 34717001 34720899 PCT