Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1329 ATGGGTCGTGTTAAACTGGAGATTAAAAGAATAGAGAACACCACGAACCGACAAGTTACATTCTCAAAGCGTAGAAATGGCCTTATCAAGAAAGCCTATGAGTTATCCATCCTGTGTGACATTGATATCGCCCTTATCATGTTCTCCCCATCTGGCCGTCTCAACCACTTTTCAGGCAGAAGGAGGATCGAGGATGTTTTTACTCGTTACATTAACCTTCCTGATCAAGAAAGAGATAAGTATTATTTGCTTCGGACCCTTCAACAATTGAGGAGTGAAAATGACATAGCTCTCCAACTAGCCAATCCGGGAGCCATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAGCAGGCTACATCAACAACTTCAGATGGCTGAGGAACAGATAAGGGTATATGAACCCGACCCGCTGAAGATGGCATCTATGGAGGAGCTTGAATCCAGCGAAAAGAGCCTTGTGGACACTTTAACACGGGTCATGCAAAGAAAGGAATATCTGTCAAGCAACCATCTATCTACGTATGACCCTTCCGCTATTCAGCAGGGGATGCCGACAACTTATGAGAATGTAGGATGGTTGCAGGATGGTAACCAGAACCACAACCAAATATTTGATGCATCTACTCCTTTGGATCACCTCAGGGATTTGCAGTCAACGGTGTATGATCCATTTTCACAAGGATCGAGCTCACATGCTGATGCACCAAGTATTGGGGAGTGTCACGTGACAAATCCAAGAGAGGGCAACCTTCCTTCATGGCCTCAAGGGTACACATTGTATCCTCATCATATGCAGCATGACATGGTGGCACCTGACATGTCCAATATGATGCCACATGGGCAACTGAACATGCCAATCACCGCCTCACACATGCAACCACCCAGCAATGAAGCTTCAGCTGCAGAATATGACTGCAAACCTCATCATCAGCTTAATCCCCAAATCCAATGA 957 0.4525 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLNHFSGRRRIEDVFTRYINLPDQERDKYYLLRTLQQLRSENDIALQLANPGAINSEIEELQQEVSRLHQQLQMAEEQIRVYEPDPLKMASMEELESSEKSLVDTLTRVMQRKEYLSSNHLSTYDPSAIQQGMPTTYENVGWLQDGNQNHNQIFDASTPLDHLRDLQSTVYDPFSQGSSSHADAPSIGECHVTNPREGNLPSWPQGYTLYPHHMQHDMVAPDMSNMMPHGQLNMPITASHMQPPSNEASAAEYDCKPHHQLNPQIQ* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1329 318 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 282 - -
Dod09g1329 318 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod09g1329 318 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod09g1329 318 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod09g1329 318 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Dod09g1329 318 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Dod09g1329 318 Coils Coil 110 130 - -
Dod09g1329 318 MobiDBLite consensus disorder prediction 226 251 - -
Dod09g1329 318 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod09g1329 318 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod09g1329 318 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod09g1329 318 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod09g1329 318 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Dod09g1329 318 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1329 Dod-Chr9 34570853 34575252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1329 1 294 Type I MADS-box Gene Family AT1G22130 55.521 1.19e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod09g1329 SRF-TF 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1329 - - adu:107460753 493.041