Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1312 ATGACAAACCAGATTGTGGGGGGTCCTGATGTCATGTTTGTCGCGTTAGCAGCGTCCATTGCAAACTCCCCACTGTTGCCAAATGCAGCAGTGCGGGAATCCATGGCTTTGCTTGGCGGGTTTCTTCACCTTTCCAATGGAAAACAGACGACCGTGAAGAGGTTGGAGATTGATGATGGTGGTGAAGGTGGGAATAAGGGTGGAAGAGCCAAAGTTAACAACTGGATTGATTCAATGAGGGCCTCTTCTCCAACTCGTGTCAAATCTACTTCTTTAACTGCTTCTGATGATAACCAAGAAAAAAGCTCTTGGATTCTTTATCACCCTTCTGCGTTGAACATGTTTGATCAGATAATATACAACATGAAAGGAAAGCAGATTGTTACCTTTCTTGACTATGATGGGACTCTATCCCCAATTGTTGCGGATCCAGATAAAGCATTCATGTCCAGAGAGATGAGGGCAACGCTAAAGGATATAGCAATGCATTTTCCCACAGCTATCGTCACTGGAAGATGTAGAGACAAGGTGTATAGTTTTGTGAAATTGACAGAAGTTTACTACGCCGGAAGCCATGGCATGGACATTAAGGGGCCAACAAAAAGCCGAAGTTCCAAGAAAGGAAATGATAAAGCAGTGCTTTGCCAACCTGCTAGTAAATTCCTACCAATGATAGAAGAGGTGTACAAGATCCTGTTAGAAACAACAAAGCCTATCCCAGGGGCTAAGGTGGAGAACAACAAGTTCTGCTTGTCCGTACACTTCCGTTGTGTTGACGAAAAGTGTTGGGCTACATTGGCAGAGCAAGTTAGATTGGTGCTCAATGACTACCCAAAACTCAAGCTAACCCAAGGGAGAAAAGTGCTAGAGATCCGTCCAACCATCAAATGGGATAAGGGCAAGGCTCTTGAATTCTTGCTAGCATCGCTAGGATATGAGCATTCTAATGACGTATTCCCAATCTATATTGGTGATGATCGAACTGACGAGGATGCTTTTAAGGTTTTGCACAGCAGGGGTCAGGGAATGGGGATTCTTGTTTCTAGAGTTCCAAAAGACACAGCAGCTTCCTATACCTTGAAGGATCCATTAGAGGTTGAGCAATTTTTGCGGCGTCTAGTGGAGTGGAAAAGATACAGTGTGACTCCCTCACGTATGTAG 1161 0.4444 MTNQIVGGPDVMFVALAASIANSPLLPNAAVRESMALLGGFLHLSNGKQTTVKRLEIDDGGEGGNKGGRAKVNNWIDSMRASSPTRVKSTSLTASDDNQEKSSWILYHPSALNMFDQIIYNMKGKQIVTFLDYDGTLSPIVADPDKAFMSREMRATLKDIAMHFPTAIVTGRCRDKVYSFVKLTEVYYAGSHGMDIKGPTKSRSSKKGNDKAVLCQPASKFLPMIEEVYKILLETTKPIPGAKVENNKFCLSVHFRCVDEKCWATLAEQVRLVLNDYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLASLGYEHSNDVFPIYIGDDRTDEDAFKVLHSRGQGMGILVSRVPKDTAASYTLKDPLEVEQFLRRLVEWKRYSVTPSRM* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1312 386 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 12 381 IPR044651 GO:0004805|GO:0005992
Dod09g1312 386 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 130 339 IPR006379 -
Dod09g1312 386 SUPERFAMILY HAD-like 130 377 IPR036412 -
Dod09g1312 386 TIGRFAM T6PP: trehalose-phosphatase 125 374 IPR003337 GO:0003824|GO:0005992
Dod09g1312 386 Pfam Trehalose-phosphatase 130 363 IPR003337 GO:0003824|GO:0005992
Dod09g1312 386 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 12 381 - -
Dod09g1312 386 Gene3D - 127 232 IPR023214 -
Dod09g1312 386 Gene3D - 245 383 IPR023214 -
Dod09g1312 386 CDD HAD_TPP 130 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1312 Dod-Chr9 34285338 34288135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1312 123 373 Trehalose Biosynthesis Gene Families AT1G70290 27.206 3.00e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1312 K01087 - gmx:100788641 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1278 08 18268188 18271579 Dod09g1312 09 34285338 34288135 PCT