Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1287 ATGAGTGAGACGGCTACTCTTCATGCACAAACAAGGACACCCTTTTCTTCCTTTTCTTCTTCTTCCTCTGATGCCATGGCTTGCCCACATTACCGACCACACTTAGGAGACACGACTTTCACAAAGTTGTTTGTCGGAGGACTAGCTTGGGAGACTCCAACTGAAGAACTCCGCAAATACTTCGAGCAGTTCGGGGACATCCTTGAGGCTGTCATAATCACTGACAAGAACACAGGAAAATCCAAAGGCTACGGATTCGTAACTTTCCGCGATCAGGAATCAGCGAGAAGGGCTTGTGCTGATCCAAACCCAATAATAGATGGAAGAAGAGCAAATTGCAATATTGCTTCTCTTGGGAGGACTAGACCATCACCACCACGAGGGAGGAACTACACAGCTCAAGGTGAAGGAGGAACAGCACATGGTGCGGCGTCTTACGGCAGTGTGCCGGGGACAGGACAACCACCATCACTGCCACCACCACCACCACCTCTACTGTACCCACCACCGTATGGCTACCCAACCTACACTCCTGACTATGGGTACCACCAAGCGACAATGTACACCCCACAGATTCAGAATCCACAATACTACCCTCAACAACTCTATGGATCGTCATCATCCACTACTATGGGCTCCCCATATTACTATGGCTATTCTGTGCAAGCACCAAGAAGCACATTCTCTTCTCCCCAAGCAAATCGCTTACCACCAGCTGGACCGTCCTATGTGTACTACCCTACCCCTCTGGAAGCAAGCTCCTTCTCTGGATATCATCATCCACTCCAACAACCAGCAACAGCAATAAGGCAACCCTTCCCTTCCCCTAGTGATCTACAAAGTCAGCAGCGTAGCTCCTCTGAGACCGCAGCTGGAGTAGTTATAACTTCAGAAAGTTCATCAAATACCCAAGGGAAGAACTAA 924 0.4924 MSETATLHAQTRTPFSSFSSSSSDAMACPHYRPHLGDTTFTKLFVGGLAWETPTEELRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDQESARRACADPNPIIDGRRANCNIASLGRTRPSPPRGRNYTAQGEGGTAHGAASYGSVPGTGQPPSLPPPPPPLLYPPPYGYPTYTPDYGYHQATMYTPQIQNPQYYPQQLYGSSSSTTMGSPYYYGYSVQAPRSTFSSPQANRLPPAGPSYVYYPTPLEASSFSGYHHPLQQPATAIRQPFPSPSDLQSQQRSSSETAAGVVITSESSSNTQGKN* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1287 307 CDD RRM_RBM24_RBM38_like 41 116 - -
Dod09g1287 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 100 IPR000504 GO:0003723
Dod09g1287 307 SUPERFAMILY RNA-binding domain, RBD 32 133 IPR035979 GO:0003676
Dod09g1287 307 MobiDBLite consensus disorder prediction 268 307 - -
Dod09g1287 307 Gene3D - 8 138 IPR012677 -
Dod09g1287 307 MobiDBLite consensus disorder prediction 256 307 - -
Dod09g1287 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 118 IPR000504 GO:0003723
Dod09g1287 307 PANTHER GEO13361P1-RELATED 27 296 - -
Dod09g1287 307 SMART rrm1_1 42 114 IPR000504 GO:0003723
Dod09g1287 307 MobiDBLite consensus disorder prediction 1 22 - -
Dod09g1287 307 MobiDBLite consensus disorder prediction 116 161 - -
Dod09g1287 307 PANTHER - 27 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1287 Dod-Chr9 33994999 34000270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1287 37 117 C2H2 Transcription Factor Family AT2G19380 40.741 1.65e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1287 K25006 - gmx:100811977 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1255 08 17568811 17575240 Dod09g1287 09 33994999 34000270 PCT