Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1264 ATGGCGCTACTGCGTCTTCTTTGCTTTCCTTCAACAGCACAAGCCCAAACCCTTGTAACCTCTTTCTCATCCCATAAGACTAACAACCATTCCATCATCGCCAAACCACCTCCTTCTTCTTCTTCTTCTTCTTTTCACCTCCTACAACCACAATGGTCCCTTCCCCACCACACCCCAAAACTTGTCAGAACCAAACAAACCCCTAATTTCACTCTCAGATTCGCCCAACAGGCAGAGGCAGCAAGTGTCTCCACCGAGGAGGAAGAACAAGGAGAAACCCAAGAATTTTCTCGGACGAGGTTGCTCGCTCAGAACGTGCCTTGGACCAGTACCCCTGAAGACATTCGTTCTTTGTTCGAGAGACATGGAAGAGTCATCGAAGTTGAGTTGTCTATGTTCAACAAGACCAAGAACAGGGGTTTGGCCTTTGTGGAAATGGGTTCACCAGAAGAAGCTCGTGCGGCTCTGGAAAATCTTGAATCGTATGAGTTTGAGGGTCGGATAATAAAAATCAATTATGCTAGGCCGAAAAAGAAGAAAACTCCTCCGCCTCCTAAGAAACCAAAGCCTGTGAGATTTAACTTGTTCGTTGCAAACTTGTCCTATGAAGCAAGGTCCAAAGATCTCAAGGCGTTTTTTGACGATGGAAGTGGTAGTGTTGTTTCTGCAGAGGTTATATTTCATGATAACCCTAGAAGGTCATCTGGTTATGGATTTGTGGGCTTCAAAACCAAGAAGCAAGCTGATACAGCTCTTTCTGAGTTCCAAGGAAAGATTTTTATGGCAAGACCTATCAGGGTGGCTCGTGGTAGGCAATTTGTTAAGCAACCAGTAAAAGAGAGTGAAAAGTCTGAAGATGAGTCTTCTGAGTTGAGTGTGAATGGCGCAGAAGCTGACAAAGCTCATTGA 909 0.451 MALLRLLCFPSTAQAQTLVTSFSSHKTNNHSIIAKPPPSSSSSSFHLLQPQWSLPHHTPKLVRTKQTPNFTLRFAQQAEAASVSTEEEEQGETQEFSRTRLLAQNVPWTSTPEDIRSLFERHGRVIEVELSMFNKTKNRGLAFVEMGSPEEARAALENLESYEFEGRIIKINYARPKKKKTPPPPKKPKPVRFNLFVANLSYEARSKDLKAFFDDGSGSVVSAEVIFHDNPRRSSGYGFVGFKTKKQADTALSEFQGKIFMARPIRVARGRQFVKQPVKESEKSEDESSELSVNGAEADKAH* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1264 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 266 IPR000504 GO:0003723
Dod09g1264 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 169 IPR000504 GO:0003723
Dod09g1264 302 MobiDBLite consensus disorder prediction 273 290 - -
Dod09g1264 302 Gene3D - 180 286 IPR012677 -
Dod09g1264 302 MobiDBLite consensus disorder prediction 271 302 - -
Dod09g1264 302 PANTHER OS08G0483200 PROTEIN 1 301 - -
Dod09g1264 302 SUPERFAMILY RNA-binding domain, RBD 99 269 IPR035979 GO:0003676
Dod09g1264 302 SMART rrm1_1 100 172 IPR000504 GO:0003723
Dod09g1264 302 SMART rrm1_1 194 268 IPR000504 GO:0003723
Dod09g1264 302 MobiDBLite consensus disorder prediction 79 98 - -
Dod09g1264 302 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 301 - -
Dod09g1264 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 272 IPR000504 GO:0003723
Dod09g1264 302 Gene3D - 65 179 IPR012677 -
Dod09g1264 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 176 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1264 Dod-Chr9 33750638 33752984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1264 70 267 Eukaryotic Initiation Factors Gene Family AT3G16380 28.155 3.80e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1264 - - gmx:100790439 333.183