Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1259 ATGAACATTCTCATCACTCTCCCACTCTCCAATGCTCATCATATAATTAGTCGCCACAACTTGCTTACCCTAATAATTTTCCTCCTCACGCAGACCGCACCGCCCTCAACCGCTCAGCCACTCCCGGCACCGCCGCCGGTACAAGCGGGGAAAAAGTCAGTGGCGGGCGTCATGGTAGTAGTGGCAGTTCTGTTCTTCATCTCAGGCTTTCTCTCCCTCTACACTCGCCAATGCGCGGACCGAAGACCACGAACCCGAGGAAACAGACTCGACCTCGCTCTCCCCATCGGCGGCGGCAGCAACGGGCGGCGACTCAACATGGAGCCACGTGGCCTAAACCCTGACGTCATCGAGAGCTTCCCCACGTTCCTATACGCAACCGTGAAGGGCCTCATGGTAGCGAAAGAAGTCCTGGCTTGTGCGATCTGCTTGGACGAGTTCCAAGACGACGAAACGCTGCGTTTGATCCCAAACTGCAGCCACGTCTTTCACCCTGCTTGCATCGATGCATGGCTGGCGTCGAACTCCACCTGCCCCGTTTGCCGCGCCAACCTCGTACCGAGATCCGAGGAGGAGGAGGAGCCCCCGTTCGTTGCCCTTGAGGTTCCCGACGACGACCCGCTGGAGCATCATCATCAACCAAACGACAATGACAATAACGCCGTTATTGGAGTCACTGTGGAGTCTCCGAAGGAGAACACACTTGGTCGGATTCGTAGTTGTACGAACCGGACTCCTCCAAGGTCACGGTCGACGGGGTTTTTGTTTGGTATGTTGTTTCGGCGGTCTGACTCGAGTGGTCGCTCGGTTGAACGTTGCGAGAGGTTTACAACTACTGTGAGGTTACCGGAGGAGGTGCGGAGGAGGCTAGTGGTGAACTGTACTAGGCTGAAGCGTGCGAAGAGTTGCGTGAGCTTCGGGAGGATGGGGAGTGGGAGAAGGGGTTACAGGGCAAGAAGCGTTGGGAGCGGAGGAGGCAGGAGATATTTGGAGTGGCAGTTTCACGGTGAGGAGGAGCAGTGGGGGTTCGCATTGACGACGCCGTTTTTCGCTAGATCAGGGAGGAGATCATCACCTGTTCATGATCATGGTGTTGCGGGTGAGCGGTCCTCTGATCACTTGTGTCCTGGGATTCTGGCCAATCATCAGGGTGGCTAA 1158 0.5648 MNILITLPLSNAHHIISRHNLLTLIIFLLTQTAPPSTAQPLPAPPPVQAGKKSVAGVMVVVAVLFFISGFLSLYTRQCADRRPRTRGNRLDLALPIGGGSNGRRLNMEPRGLNPDVIESFPTFLYATVKGLMVAKEVLACAICLDEFQDDETLRLIPNCSHVFHPACIDAWLASNSTCPVCRANLVPRSEEEEEPPFVALEVPDDDPLEHHHQPNDNDNNAVIGVTVESPKENTLGRIRSCTNRTPPRSRSTGFLFGMLFRRSDSSGRSVERCERFTTTVRLPEEVRRRLVVNCTRLKRAKSCVSFGRMGSGRRGYRARSVGSGGGRRYLEWQFHGEEEQWGFALTTPFFARSGRRSSPVHDHGVAGERSSDHLCPGILANHQGG* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1259 385 Pfam Ring finger domain 139 182 IPR001841 -
Dod09g1259 385 SMART ring_2 140 181 IPR001841 -
Dod09g1259 385 MobiDBLite consensus disorder prediction 202 221 - -
Dod09g1259 385 SUPERFAMILY RING/U-box 136 188 - -
Dod09g1259 385 CDD RING-H2_PA-TM-RING 140 182 - -
Dod09g1259 385 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Dod09g1259 385 PANTHER RING FINGER DOMAIN-CONTAINING 7 324 - -
Dod09g1259 385 MobiDBLite consensus disorder prediction 356 377 - -
Dod09g1259 385 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 324 - -
Dod09g1259 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 187 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1259 Dod-Chr9 33705036 33706193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1259 25 320 Rapid Response to Elicitors AT3G05200 39.871 1.55e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1259 K10664 - gmx:100814384 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1226 08 16592921 16594529 Dod09g1259 09 33705036 33706193 PCT