Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1258 ATGTCCACTCACACCAACAGGGAGTTCCCTGTTCCCACCACTTCTTCCCTTCATGGCCTCCTCCACCTCCTCCTCTTCTTCCTCGTCCTCGTGCTGGCTCCGCCGCCGGCCGCCGCACAGCTCCCCAACGCTCTGTCGCCTCCGCCGGCGGACACACTCTCAAAGGTGAAGTTCGACAAATCCATGGCCATCGTGCTTGTGGTCCTGGTGGTGGTGTTCTTCCTCCTCGGCTTCCTCTCCGTGTACACGCGCCACTGCGCGGAGCGGAGGATGAGAGGGAGGTTCGACCTATCGATCCCAATCATCGGAAGCGGGGGGCGGCACCGTGGCCTTGACCCGGAGATCATCGACAGGTTCCCGACGTTCGTGTACTCCGCCGTGAAGGGCCAGAAGATAGGGCGGGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTCCACGACGACGAAACGCTGCGTTTGATCCCCAAGTGTAACCACGTGTTCCACCCCGACTGCATCGACGCCTGGCTCGTCAATCACTCCACCTGCCCCGTTTGCCGCGCCAACCTGATTCCCACACCCGGAGAAATGTCCGTGGCCGTCCAGATCCCGGATCCTGAATCCAACGACTCGGGTGTGCCCGAACCTGGATCCGACCCAAACGCCCGGGCCCACGTCGTTAACGTTAGCGATAACGGTGACGGAGCGGGAGTAACGGGAACCGTAACGGAGTCTCCGAAGGCGGATAATTCTTTTAATCAGAGCCGTCCGCCTCGGTCAAGGTCAACGGGTTTTAGGTTCGGGAGTTTGTTTCCGCGGTCGCATTCAACGGGTCACTCGCTGGTCCAACCGGGGGAGAGCTTGGAGCGGTTCACGCTGAGGCTGCCAGAGGATGTTCGGAACCGGCTTCTGGTAAGTTCGACGCCGAGGCGCACCGCGAGCCACGGCGGCGCGGCGTTCGCGCGTGAGAGCAGCGTGAGGAGAGGTTACAGGACGAGGAGCGTTGGCGGAGGGAGGAATTATCTGCAGTACGAGCGGTTCGGCCGCGCGGACCGGCGCGGGTTCAACTGGACGCCGCCGTTTTTGAGTAGGGCAGGTTCGACGAGGTCGCCGAAGGGCTCGACGACGGAGCGGAACAAGGATGCGGTGGTGGTGGAAATTGGTGAACGGTCTTCGGATCGGTTATTTGCAGGTGGCGAGATTTAG 1188 0.6178 MSTHTNREFPVPTTSSLHGLLHLLLFFLVLVLAPPPAAAQLPNALSPPPADTLSKVKFDKSMAIVLVVLVVVFFLLGFLSVYTRHCAERRMRGRFDLSIPIIGSGGRHRGLDPEIIDRFPTFVYSAVKGQKIGRATLECAVCLNEFHDDETLRLIPKCNHVFHPDCIDAWLVNHSTCPVCRANLIPTPGEMSVAVQIPDPESNDSGVPEPGSDPNARAHVVNVSDNGDGAGVTGTVTESPKADNSFNQSRPPRSRSTGFRFGSLFPRSHSTGHSLVQPGESLERFTLRLPEDVRNRLLVSSTPRRTASHGGAAFARESSVRRGYRTRSVGGGRNYLQYERFGRADRRGFNWTPPFLSRAGSTRSPKGSTTERNKDAVVVEIGERSSDRLFAGGEI* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1258 395 MobiDBLite consensus disorder prediction 195 264 - -
Dod09g1258 395 SUPERFAMILY RING/U-box 133 190 - -
Dod09g1258 395 MobiDBLite consensus disorder prediction 356 375 - -
Dod09g1258 395 MobiDBLite consensus disorder prediction 228 264 - -
Dod09g1258 395 CDD RING-H2_PA-TM-RING 138 181 - -
Dod09g1258 395 SMART ring_2 139 180 IPR001841 -
Dod09g1258 395 MobiDBLite consensus disorder prediction 301 322 - -
Dod09g1258 395 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Dod09g1258 395 PANTHER RING-H2 FINGER PROTEIN ATL11 21 313 - -
Dod09g1258 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 186 IPR013083 -
Dod09g1258 395 PANTHER RING FINGER DOMAIN-CONTAINING 21 313 - -
Dod09g1258 395 Pfam Ring finger domain 138 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1258 Dod-Chr9 33686132 33687897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1258 24 384 Rapid Response to Elicitors AT3G05200 39.314 1.74e-64 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1258 K10664 - gmx:100815982 364.77