Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1223 ATGGCTAGTGTTTCCATAGCTTCTTCTTTCAACAACCTCACCATCACATCCTTCTCCTTTCTCATCATTACCCTCCTCCTCCTACTTCCCCCTTCCAACAACACTGTTGCATACGCAGACGCCAACGACACCAGAGAAACTCCACCTCCACCGCCGCCTCCTATTTCTGACGGGACGGAAAAAACCTCATCCGCCTTCAAGCCAGGCATGGCCGTCGTAGTCGGCGTTCTAACCACCATGTTCTCCCTCACCTTCCTCCTCCTGCTCTACATCAAGCACTGCAACAGCAGCAGCACCACCGACTCCACCGCCGGAACGGGCTACCCAACCTCACGCGCCGCCGCCACACCCGTCGCCGGAAGAAAAAACTCCGGCATCGACCGTTCCATCGTCGAATCATTACCGATCTTCAGATTTGGATCCCTTAGGGGACACAAGGACGGCCTTGACTGCGCAGTCTGCCTCAACAAGTTCGAGTCCTCCGAGGTCCTCCGGCTCCTCCCGAAGTGCAAGCACGCGTTCCACGTCGAGTGCGTCGACACGTGGCTCGACGCGCACTCCACGTGCCCACTCTGCCGCCACCGCGTCGATCCGGAGGACATTCTTCTCGTGGAAGACACCAAGCTGGTCGTACCGTTACACCAACAACAGAACAACAACAACAACGAGCACGAGTGTTGTTCGGAGAGGAACTCGTCCGTTTTGGAGACTCGTAGAGTTTCCGGGAGGCACTCTTCGGTCGGGGAGAAAGAAGGAGGGTTCTTGGAGATAATTTTAGAGGATGAAACGGAAGGACGAAACGGTGCGTCGTTTAGGAGGTCCTTGGACAGTGCCACGTGTGCGGCGTCGAGATCGAGAAAGAAGGAAGGCGTGATGAGCGTGACGGGTTGGTTACTGCGTCCCAGAAAAGACGGGATGCTGTTGGTGACGCAGGAGGCGGAGAGAGGAGGGAGCACGAGGGCGAGCGCGGAACGGAGGGTGGAGCACAGGATTATTGTCTCCCCTTCGCCTAAGAAGCAATGTGGTTACGGTGGGCTCCACAGGGACCAACGGTGGAGCGATGTTCAGCCGTCGGATCTGTTGTATCTGACGTCGGAGATGATAATCAGCGGCGGGAAATGGAATAGGAAGCAGAAGCAGCAGCAGCAGCACCGGATGATTACTAATAATGATGATGATGATGGCAATGTGAGGGTGCCGATGGTGCAGTGGAACAGCACGCGCAAGGGGGTGAATAATGATGTTGATGGTGGAAGAGTGGTGGAGGACAGCTGGGTAATAAATACGAGGAGTGTGTCGGAGATCACGGGATTGAGCAGGTTCTTGAGCAACAGGAACAGCGAGGAGGAAGAAGTGTTGGGAGGAGGACAAGAACACGAACGAGAAGAGGGAGTGGTTTCGAGGTGGTTGGCTTGGATTTCAAGGTCACGGACACAGCCAGCTGTACGGTAG 1452 0.5565 MASVSIASSFNNLTITSFSFLIITLLLLLPPSNNTVAYADANDTRETPPPPPPPISDGTEKTSSAFKPGMAVVVGVLTTMFSLTFLLLLYIKHCNSSSTTDSTAGTGYPTSRAAATPVAGRKNSGIDRSIVESLPIFRFGSLRGHKDGLDCAVCLNKFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRHRVDPEDILLVEDTKLVVPLHQQQNNNNNEHECCSERNSSVLETRRVSGRHSSVGEKEGGFLEIILEDETEGRNGASFRRSLDSATCAASRSRKKEGVMSVTGWLLRPRKDGMLLVTQEAERGGSTRASAERRVEHRIIVSPSPKKQCGYGGLHRDQRWSDVQPSDLLYLTSEMIISGGKWNRKQKQQQQHRMITNNDDDDGNVRVPMVQWNSTRKGVNNDVDGGRVVEDSWVINTRSVSEITGLSRFLSNRNSEEEEVLGGGQEHEREEGVVSRWLAWISRSRTQPAVR* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1223 483 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Dod09g1223 483 MobiDBLite consensus disorder prediction 39 62 - -
Dod09g1223 483 SUPERFAMILY RING/U-box 132 198 - -
Dod09g1223 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 200 IPR013083 -
Dod09g1223 483 CDD RING-H2_EL5_like 150 193 - -
Dod09g1223 483 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 40 478 - -
Dod09g1223 483 PANTHER RING-H2 FINGER PROTEIN ATL43 40 478 - -
Dod09g1223 483 Pfam Ring finger domain 150 193 IPR001841 -
Dod09g1223 483 SMART ring_2 151 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1223 Dod-Chr9 33251475 33253331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1223 63 482 C3H Transcription Factor Family AT5G05810 43.287 3.22e-85 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1223 K19041 - vvi:100259882 351.673