Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1221 ATGACGAGGACGAAGATCAAGATCAAGAAAATCGACAACATAACGGCGAGGCAGGTAACGTTCTCAAAAAGGAGGAGAGGGCTCTTCAAGAAAGCTCAAGAGCTTTCGGTGCTTTGCGACGCTGAAGTCGGCCTCATTGTGTTCTCGGCTACCGGCAAGCTCTTTGATTATGGCAGCTCCAGTATGAAGGACATAATTACAAGGTATAATGCGCAGTTTCATGACAACAACAAATTGGACAGATCTTCTCTAACACAGCCGGAGCAGCTCGAAGGTGATAGCGCCAAATTGTGTGAGGAAGTTGCAGATAGAACCCAACAACTGAGGAGGATGAATGGCGAGGATATTCAAGGACTAGACTTAAATGAGTTGCAGCAATTGGAGAAAACACTTGAAGCAGGACTCAACCGCGTGATGGAAACAAAGGCAGAGCGGATTATGGGTGAGATATCTGAGCTTCAGAAAAAGGGAATCAGGTTGGAAGAGGAGAACAAGAAGTTGAGGCAAAAGGTGGCTATTCTGTGTAAAGGGAAAACTCCGTTTGGGGTGCACTCAAATATTGACATGAATGAAGCTGCTTCATTAGAGTCTATGAATAACATTAGCAGTTGCATCTGTGATCCTCCACCTGAGGATGATTCCTCAGACACATCTCTCAAGTTAGGGTTGCCCTTCTCTCACTGA 684 0.4547 MTRTKIKIKKIDNITARQVTFSKRRRGLFKKAQELSVLCDAEVGLIVFSATGKLFDYGSSSMKDIITRYNAQFHDNNKLDRSSLTQPEQLEGDSAKLCEEVADRTQQLRRMNGEDIQGLDLNELQQLEKTLEAGLNRVMETKAERIMGEISELQKKGIRLEEENKKLRQKVAILCKGKTPFGVHSNIDMNEAASLESMNNISSCICDPPPEDDSSDTSLKLGLPFSH* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1221 227 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 221 - -
Dod09g1221 227 Coils Coil 124 170 - -
Dod09g1221 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod09g1221 227 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Dod09g1221 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod09g1221 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod09g1221 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod09g1221 227 CDD MADS_MEF2_like 12 69 IPR033896 GO:0000977|GO:0045944
Dod09g1221 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Dod09g1221 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod09g1221 227 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod09g1221 227 MobiDBLite consensus disorder prediction 208 227 - -
Dod09g1221 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Dod09g1221 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod09g1221 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod09g1221 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1221 Dod-Chr9 33206946 33213698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1221 1 225 MADS-box Gene Family AT2G22540 52.720 3.59e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod09g1221 K-box 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1221 - - gmx:100776749 268.855