LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g1200	ATGTACGGCCCCATGAACATCCCTAACCAGACCCCCGCCGCCGAAGACAGCGGCGGCGCTGCCTCTGACTCCGTCGACAACCACCACCACATTCATCACTACAATTCTCACGGCCTCGATGACGGTGCCGGCGGAGTCGTCGAAGACGTCTCCGCCGACACGGTGTATGTCTCCCCCGACATGTCCATCCATCCCTGTGAAGATTCCAGCCAGCTCACGCTCTCGTTTCGTGGCCAAGTCTATGTCTTCGATTCTGTTACTCCTGATAAGGTTCAAGCGGTGTTGTTGCTGTTGGGAGGGTGTGAAATGCCATCTTCGGGGTCGCAGTGTGCGGAGATATCACCTCAGAATCAGAGGGGTGCAATGGAATTTCCCGTAAGGTGCAGCCAGCCGCATCGAGCAGCGTCATTGAGTAGGTTCCGGCAGAAGAGGAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGTGTGCGTCAAGAAGTTGCACTCAGGATGCAGCGTAATAAGGGTCAATTTACTTCAGCTAAGAAACAAGATGGAGCTAATAGTTGTGGTTCAGACCAAGAGTCAGTTCAAGATGCTGTTCGATCAGAAACCTCATGCACACACTGTGGCATAAGCTCAAAATCTACCCCAATGATGCGGAGAGGACCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTCTTTTGGTCAAATAGGGGTACTATGAGAGACCTTTCCAAGAGGAACCAGGAACATGCTCTTGCACAACCCGAGCAGGTTGATGAAGGTAACAACTCAGACGGTCGAACTGCCATCTCTGAAAATAACAATGTTGCTACTTTCTCTGAAAATGATAACACATCTTTGGCATCCGATCGATGA	870	0.5046	MYGPMNIPNQTPAAEDSGGAASDSVDNHHHIHHYNSHGLDDGAGGVVEDVSADTVYVSPDMSIHPCEDSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCEMPSSGSQCAEISPQNQRGAMEFPVRCSQPHRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKQDGANSCGSDQESVQDAVRSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWSNRGTMRDLSKRNQEHALAQPEQVDEGNNSDGRTAISENNNVATFSENDNTSLASDR*	290

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g1200	289	Pfam	GATA zinc finger	201	238	IPR000679	GO:0006355\|GO:0043565
	Dod09g1200	289	MobiDBLite	consensus disorder prediction	22	37	-	-
	Dod09g1200	289	ProSiteProfiles	CCT domain profile.	133	175	IPR010402	GO:0005515
	Dod09g1200	289	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	196	246	-	-
	Dod09g1200	289	SMART	tify_2	65	100	IPR010399	-
	Dod09g1200	289	CDD	ZnF_GATA	200	246	IPR000679	GO:0006355\|GO:0043565
	Dod09g1200	289	MobiDBLite	consensus disorder prediction	255	289	-	-
	Dod09g1200	289	MobiDBLite	consensus disorder prediction	246	289	-	-
	Dod09g1200	289	ProSiteProfiles	Tify domain profile.	65	100	IPR010399	-
	Dod09g1200	289	MobiDBLite	consensus disorder prediction	1	45	-	-
	Dod09g1200	289	SMART	GATA_3	195	248	IPR000679	GO:0006355\|GO:0043565
	Dod09g1200	289	PANTHER	GATA TRANSCRIPTION FACTOR 28	18	263	IPR045280	GO:0006355
	Dod09g1200	289	PANTHER	GATA TRANSCRIPTION FACTOR 25	18	263	-	-
	Dod09g1200	289	Gene3D	-	192	252	IPR013088	GO:0006355\|GO:0008270
	Dod09g1200	289	ProSiteProfiles	GATA-type zinc finger domain profile.	195	254	IPR000679	GO:0006355\|GO:0043565
	Dod09g1200	289	Pfam	CCT motif	133	175	IPR010402	GO:0005515
	Dod09g1200	289	ProSitePatterns	GATA-type zinc finger domain.	201	228	IPR000679	GO:0006355\|GO:0043565
	Dod09g1200	289	Pfam	tify domain	69	99	IPR010399	-
	Dod09g1200	289	MobiDBLite	consensus disorder prediction	168	191	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g1200	Dod-Chr9	32958090	32962459	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g1200	65	288	Tify Gene Family	AT4G24470	55.833	2.98e-87	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Dod09g1200		CCT	2.7e-15	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g1200	-		-	pvu:PHAVU_008G182900g	392.119