LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g1198	ATGGCGGCGGTGAACCCACAGCCTCTTCAGGCGCGTCCGTTCGAGGAGCACGCCATACCGGTCGACGAAGACGACGTCGTAGTTGAGTACGAGGATGGCGGGGTCGGTGTCGTTGGCGGTGGCGGTGATGATATGGAGGAAGAGTTGGAGGAAACAAATGTGAATCCGGTTAGCGTGGGCGCGCGTGCGAATCACGCGGCGGTTGTTATGCCTTCGCGCACAAGTGAGCTCACTCTCTCTTTCGAGGGCGAGGTTTACGTCTTTCCTGCTGTCACACCTCAGAAGGTGCAAGCTGTTTTGCTGCTTTTGGGAGGACGTGATGTGCAGATGCCTGTGCCAACAGTTGAAGTACCGCATGATCAAAGTAACAGGGGTATGGATGATACTCCGAAGCGGTCAAACCTTTCTCAGAGAATAGCCTCCTTGGTCAGGTTCCGTGAGAAACGCAAGGAAAGGTGTTTTGACAAGAAAATTAGGTACACCGTGAGAAAAGAGGTGGCCCAGAGGATGCATCGGAAGAATGGGCAATTTGCATCCTTGAAGGAAAGCCCAGGTTCATCTAACTTGGATTCTGCACAGAGTTCTAATCAAGATGGCACTCCTCATTCTGAAACTATACGTAGATGTCAACACTGTGGTGTGAGTGAACATAATACACCTGCGATGCGCCGTGGGCCAGCTGGACCAAGGACTTTATGTAATGCGTGCGGCCTTATGTGGGCTAACAAGGGTACACTAAGAGATCTCAGCAAGGGAGGTAGAAACCTTTCTGTGGAACAAAGCGATCCGGAGACTCCTACTATTGATGTCAAGCCTACTGTTCTAGAAGGGGAATTGGCTAGCATCCGTGATGAGCAAGGAATTTCTGAAGATCCTTCCAAAGCTAATGCAGCTGAGGGTTCTAATAATCATGATATAAACCCTGGTGATGAGGAATTGCCTGAATCTGCCGAACAATTTACAAGCTCTCTGCCAATGGGAATTGGTCATTCTTCAAATGATGACGAGCAGGAACCTCTGGTTGAGCTTTCTAATCCTTCAGATACAGATATTGACATTCCCAGAAACTTTGGATAG	1077	0.494	MAAVNPQPLQARPFEEHAIPVDEDDVVVEYEDGGVGVVGGGGDDMEEELEETNVNPVSVGARANHAAVVMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVQMPVPTVEVPHDQSNRGMDDTPKRSNLSQRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSNLDSAQSSNQDGTPHSETIRRCQHCGVSEHNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDPETPTIDVKPTVLEGELASIRDEQGISEDPSKANAAEGSNNHDINPGDEELPESAEQFTSSLPMGIGHSSNDDEQEPLVELSNPSDTDIDIPRNFG*	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g1198	358	SMART	tify_2	70	105	IPR010399	-
	Dod09g1198	358	ProSitePatterns	GATA-type zinc finger domain.	209	236	IPR000679	GO:0006355\|GO:0043565
	Dod09g1198	358	ProSiteProfiles	Tify domain profile.	70	105	IPR010399	-
	Dod09g1198	358	MobiDBLite	consensus disorder prediction	247	269	-	-
	Dod09g1198	358	Pfam	GATA zinc finger	209	245	IPR000679	GO:0006355\|GO:0043565
	Dod09g1198	358	CDD	ZnF_GATA	208	252	IPR000679	GO:0006355\|GO:0043565
	Dod09g1198	358	MobiDBLite	consensus disorder prediction	167	205	-	-
	Dod09g1198	358	ProSiteProfiles	CCT domain profile.	138	180	IPR010402	GO:0005515
	Dod09g1198	358	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	202	253	-	-
	Dod09g1198	358	SMART	GATA_3	203	256	IPR000679	GO:0006355\|GO:0043565
	Dod09g1198	358	MobiDBLite	consensus disorder prediction	284	358	-	-
	Dod09g1198	358	PANTHER	GATA TRANSCRIPTION FACTOR 28	1	357	IPR045280	GO:0006355
	Dod09g1198	358	MobiDBLite	consensus disorder prediction	316	330	-	-
	Dod09g1198	358	Pfam	tify domain	72	104	IPR010399	-
	Dod09g1198	358	MobiDBLite	consensus disorder prediction	179	203	-	-
	Dod09g1198	358	Pfam	CCT motif	138	179	IPR010402	GO:0005515
	Dod09g1198	358	Gene3D	-	203	256	IPR013088	GO:0006355\|GO:0008270
	Dod09g1198	358	ProSiteProfiles	GATA-type zinc finger domain profile.	203	262	IPR000679	GO:0006355\|GO:0043565
	Dod09g1198	358	PANTHER	GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1	1	357	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g1198	Dod-Chr9	32945445	32950468	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g1198	76	251	Tify Gene Family	AT1G51600	59.783	6.18e-66	209

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Dod09g1198		CCT	1.4e-13	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g1198	-		-	gmx:100801328	517.694