Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1187 ATGTCTGTTGTCATGGACAACGGTATACTTCAAGTATATTTATCCAAACCGGGTGGATTTATCACTGGAATACAATATAATAGCATTGATAATCTGCTTGAAGCTTCTGTGGAAGGAGATGATAGAGGGTATTGGGACATTGTTTGGAGTGAAGCAGAGAGCACAGGAACATCCGGGATATTTGAGCGGGTTGTAGGAACAAGCTACAGAGTTATAGTGAAAAATGAAGAACAGGTGGAAATTTCATTTACAGCAACATGGGATCCATCTCTGACGAAAAAGCAGTCGCCTCTAAATATTGACAAAAGGTATGTGATGCTGCGTGATTCCTCAGGCTTCTACTCTTATGCCATCTTTGAGCACCTAAAAGAATGGCCTGCTTTCAACATACCTCAGATCAGAATGGTTTTCAGGCTTCGAAAAGACAAGTTTCATTATATGGCCATAGCCGATAATAGGCAAAGGCATATGCCTCTTCCAGAGGACAGATTACCAAGAAGAGGAAAAGCGCTACATCCACCAGAAGCAGTGTTGCTCGTCAATCCAGTGGAACCAGACTTCAAGGGAGAGGTGGATGACAAGTACCAGTACTCAAGCGACAACAAAGACCTTCAGGTGCATGGTTGGATAAGCTCTCAAACCGGAACTGATCCGACCATGGGGTTCTGGGTAATCATACCCAGCAATGAGTTCCGATCAGGTGGCCCTCTTAAACAGAACCTCACCTCCCATGTCGGTCCCATCAGCCTCGCAATGTTTCAGAGTGCTCATTACGCAGGAGAGGACTTAGTTCTGAAACTCCAATCGAATGAGCCGTGGAAGAAGGTTTTCGGGCCATTTTTTGTATATCTTAACGCTGCATCGGATGACCAGGACCAATCATGGCTCTGGAAGGATGCCAAATATCACATGGTCAAGGAAGTTCAAAGTTGGCCCTACGATTTTCCAGCTTCAGAGGATTTTCACAAGTCTCACCAACGTGGCAGTGTTTATGGCAAGTTACAAGTCCGAGACAGGTGCATAAGTGACGACCACATATTGGCACAAGGAGCATTTGTAGGTCTGGCACCACCAGGGGACACTGGATCATGGCAAACAGAATGCAAGGGATACCAATTTTGGACTAAAGCAAACGAAAAAGGCTCCTTCTCAATCAATAATATACGCAGTGGGGAGTATAATCTCTATGCATGGGTTCCGGGTTTCATTGGAGAGTATCAGAACAATCATGTCCTTACCATAAAGCCAGGTAGTAAAATTAATGTTGGTGACATTGTTTATGAGCCCCCAAGAGATGGACCAACATTATGGGAAATAGGCATTCCTGATCGTTCTGCTGCTGAGTTCTACGTTCCTGATCCTAATCCACTTTACATAAACAAGCTTTATGTCAACCATCCAGACAAGTTTAGGCAGCATGGCTTGTGGGAAAGATACGCAGAATTATATCCAAATGAAGATTTGATTTATAAAGTTGGTGATAGTGACTATAGAAAAGATTGGTTCTTTGCACATGTTACTAGGAAGAGAGATGATGGAACTTACCATGGAACTACATGGCAAATAAAGTTCAAGCTTCATAATTTGAAGATAAGTGGAACCTATAAGCTGCGACTGGCGCTTGCAACCGCGTATATCTCTGAATTACAGGTTAGAGTGAATGATCCAAAACAGCATCCACCCCTATTTACAACAGGGGTGATTGGGAAGGACAATGCGATAGCTAGACATGGGATTCATGGACTCTACAGGCTATACAATATTGATGTGTCATTTCATTTGCTGGTGAAAGGTGGCAACACTATATATCCTAACACAAACTATAGCGACTGGCCCCTTCCAGGGCATAATGTATGA 1857 0.434 MSVVMDNGILQVYLSKPGGFITGIQYNSIDNLLEASVEGDDRGYWDIVWSEAESTGTSGIFERVVGTSYRVIVKNEEQVEISFTATWDPSLTKKQSPLNIDKRYVMLRDSSGFYSYAIFEHLKEWPAFNIPQIRMVFRLRKDKFHYMAIADNRQRHMPLPEDRLPRRGKALHPPEAVLLVNPVEPDFKGEVDDKYQYSSDNKDLQVHGWISSQTGTDPTMGFWVIIPSNEFRSGGPLKQNLTSHVGPISLAMFQSAHYAGEDLVLKLQSNEPWKKVFGPFFVYLNAASDDQDQSWLWKDAKYHMVKEVQSWPYDFPASEDFHKSHQRGSVYGKLQVRDRCISDDHILAQGAFVGLAPPGDTGSWQTECKGYQFWTKANEKGSFSINNIRSGEYNLYAWVPGFIGEYQNNHVLTIKPGSKINVGDIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPLYINKLYVNHPDKFRQHGLWERYAELYPNEDLIYKVGDSDYRKDWFFAHVTRKRDDGTYHGTTWQIKFKLHNLKISGTYKLRLALATAYISELQVRVNDPKQHPPLFTTGVIGKDNAIARHGIHGLYRLYNIDVSFHLLVKGGNTIYPNTNYSDWPLPGHNV* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1187 618 Gene3D - 323 423 - -
Dod09g1187 618 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 608 - -
Dod09g1187 618 Pfam Polysaccharide lyase family 4, domain II 349 421 IPR029413 -
Dod09g1187 618 SUPERFAMILY Starch-binding domain-like 325 425 IPR013784 GO:0030246
Dod09g1187 618 Pfam Polysaccharide lyase family 4, domain III 435 603 IPR029411 -
Dod09g1187 618 PANTHER LG27/30-LIKE GENE 2 608 - -
Dod09g1187 618 Pfam Rhamnogalacturonate lyase family 2 191 IPR010325 -
Dod09g1187 618 SUPERFAMILY Galactose-binding domain-like 432 608 IPR008979 -
Dod09g1187 618 SUPERFAMILY Galactose mutarotase-like 7 287 IPR011013 GO:0003824|GO:0005975|GO:0030246
Dod09g1187 618 CDD RGL4_N 1 292 - -
Dod09g1187 618 Gene3D - 1 299 IPR014718 GO:0030246
Dod09g1187 618 Gene3D - 433 609 - -
Dod09g1187 618 CDD RGL4_M 326 425 IPR029413 -
Dod09g1187 618 CDD RGL4_C 437 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1187 Dod-Chr9 32803142 32808326 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1187 3 615 Polysaccharide Lyase AT1G09890 62.052 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1187 K18195 - gmx:100815677 996.112