Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1186 ATGATCTTCACCACCCACTTCCTGTTCTTGATGCTCCAATTCATTGTTACTCTTTCTTGCACCACTAATCCAGGAGTGCGATTGGATATTCAAGATAAACATGTGGTAATGGATAATGGCATAGTCCAGGTCAACATATCAAATCCTGAAGGAATTGTCACAGGGATTCAGTATAATGGGGTGGACAATTTGCTCGAAGTTCTCAACAAGGAATCTGACAGAGGGTACTGGGATATGGTCTGGGACGAGGGTGGAAACAAAACCAAAAAAAAGGGAACAAAGAAGAGGAAAAAGGGTGAATTTGACAGGATGGAAGCTACAAATTTGACAGTGATAGTGGAAAATGAAGAACAAGTAGAGCTATCATTCACCAGAATGTGGAATTTTTCTCTAGAAGGGAAGCATCCGCCACTCAATATTGATAAAAGGTTCATAATGCTTCGTGGTTCCTCCGGGTTCTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCTGCATTCAATCTCTCCAATACTAGGATAGCCTTCAAGCTCAGAAAAGACAAGTTCCATTACATGGCCGTAGCAGAAGACAGGCAAAGATTTATGCCTTTGCCTGATGACCGGGAAGAGGGAAGAGGCCAAGTTCTGGCCTACCCAGAAGCTGTCCTGCTGGTCAATCCCGTGGAGCCCCAGTTCATAGGAGAGGTGGACGACAAATATCAGTACCAAAGCGAGAGCCGATACAACCGTGTTCACGGTTGGATATCCCCTGACCCATCCCAATCCATTGGCTTCTGGCTTGTCACCCCCAGCCTTGAGTTCCGGACCGGTGGGCCCCTCAAGCAATACCTCACCTCCCACGTGGGCCCCACCACTCTCTCTGTATTTCACAGCACGCATTATTCGGGGCTAGACCTGATTATGAGATTTGGACCCAATGAGCCGTGGAAGAAAGTGTTTGGGCCCATATTTATATACCTTAATTCTCTGTCAAATGGGGAAAGCCCCATCATGCTCTGGGAGGACGCCCAACAACAGATGGTAAATGAAATTGAAAGCTGGCCCTATACGTTTCCAGCTTCCGAGGACTTTCTCTCATCCGACCGACGTGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGAAAGGTACATTAGTGATGCATACATCCCTGTTAGCAATGCATATGTGGGATTAGCATGCACAGGAGAGGCTGGATCCTGGCAAAGGGAATCCAAGGGATATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTACAAACATACGCCCTGGGGACTATAATCTGTACTCCTGGGTCAATGGATTCATTGGTGATTATAAATATGATAGAGTCATCAACATAACCTCAGGCTGCGAAATTAATGTTGGTGAGCTTGTATATGAACCTCCAAGAGATGGACCAACATTGTGGGAAATAGGCATCCCTGATCGATCAGCTGCTGAGTTCTATATTCCTGATCCAAATCCTAAGTACATCAACAGATTATATGTAAACCGTCCAGACAAGTATAGGCAATATGGCTTGTGGGAGAGATATGCGGATTTGTATCCTAAAGGAGACCTAGTTTACACTATTGGCAGCAGTGACTACAGAAAGGATTGGTTCTTTGCTCAGGTTAACAGAAAGACAATAAGACGTACCAACCAACGACATGGCGAATTAATTTCAATCTTGATCACGTGA 1698 0.4482 MIFTTHFLFLMLQFIVTLSCTTNPGVRLDIQDKHVVMDNGIVQVNISNPEGIVTGIQYNGVDNLLEVLNKESDRGYWDMVWDEGGNKTKKKGTKKRKKGEFDRMEATNLTVIVENEEQVELSFTRMWNFSLEGKHPPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFNLSNTRIAFKLRKDKFHYMAVAEDRQRFMPLPDDREEGRGQVLAYPEAVLLVNPVEPQFIGEVDDKYQYQSESRYNRVHGWISPDPSQSIGFWLVTPSLEFRTGGPLKQYLTSHVGPTTLSVFHSTHYSGLDLIMRFGPNEPWKKVFGPIFIYLNSLSNGESPIMLWEDAQQQMVNEIESWPYTFPASEDFLSSDRRGKVEGRLLVRERYISDAYIPVSNAYVGLACTGEAGSWQRESKGYQFWTITDDKGYFSITNIRPGDYNLYSWVNGFIGDYKYDRVINITSGCEINVGELVYEPPRDGPTLWEIGIPDRSAAEFYIPDPNPKYINRLYVNRPDKYRQYGLWERYADLYPKGDLVYTIGSSDYRKDWFFAQVNRKTIRRTNQRHGELISILIT* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1186 565 Gene3D - 27 324 IPR014718 GO:0030246
Dod09g1186 565 Pfam Polysaccharide lyase family 4, domain II 388 459 IPR029413 -
Dod09g1186 565 SUPERFAMILY Galactose mutarotase-like 34 324 IPR011013 GO:0003824|GO:0005975|GO:0030246
Dod09g1186 565 SUPERFAMILY Galactose-binding domain-like 470 548 IPR008979 -
Dod09g1186 565 Pfam Polysaccharide lyase family 4, domain III 473 552 IPR029411 -
Dod09g1186 565 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 553 - -
Dod09g1186 565 Gene3D - 361 460 - -
Dod09g1186 565 SUPERFAMILY Starch-binding domain-like 384 460 IPR013784 GO:0030246
Dod09g1186 565 CDD RGL4_N 31 324 - -
Dod09g1186 565 CDD RGL4_M 364 463 IPR029413 -
Dod09g1186 565 Pfam Rhamnogalacturonate lyase family 25 231 IPR010325 -
Dod09g1186 565 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 2 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1186 Dod-Chr9 32794138 32802340 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1186 26 554 Polysaccharide Lyase AT1G09890 65.789 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1186 K18195 - gmx:100786488 957.207