Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1185 ATGTCCTTGTATAACGTGATTGACTGCTGCTTCACTCGCACGCTTTTATCTGATCGACGACTCTCATTGCGCAATTCTAATTTCTCTGGTTCACTGAAAGTACCACCGTGCCACCATGCCGCCGCTAGGGGTTTGCAAGATATTCATTTATGTTCCGGGAAAAAACTTCATGTACAGGTGGTGATGGACAATGGCATATTAAGTGTAACCTTATCAAATCCAGGGGGAATTGTCACAGGAATACAGTATAATGGAATCGACAACTTGCTTGAAGTTTTGAATGAGGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCGCCAACAACTCCAGGAACCAGTGGTATATTTGATGTGATAAGGGGAACCGCTTTCAAAGTTATAGTGGAAAATGAGGATCAAGTTGAGATTTCCTTCACTAGGACATGGGACACGTCCCTCCAGGCCAAGATGGTTCCTTTAAACATTGATAAAAGGTTCATAATGCTTCGTGGTTCTTCCGGGTTCTACTCCTATGCAATTTATGAGCACTTAATCGACTGGCCTGCTTTCAATCTTGATGAGACAAGAATTGCCTTCAAACTCAGAAAAGACAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGATGATCGATTACTACCTAGAGGCCAACCCCTTGCTTACCCAGAAGCAGTTCTACTTGTCGATCCTGTCGAACCGGAACTGAAAGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGATAACCAAGTTCATGGGTGGATCTGCATGGATCCAGCAGTGGGATTCTGGGTAATTACGCCAAGCGATGAGTTCCGATCTGGTGGACCCGTCAAACAAAACTTGACTTCCCATGTGGGACCTACCTCGCTTGCTGTGTTTCTAAGTCCTCATTATAGCGGAGAGGATCTGGTGCCAAAGATCAAAGCAGGAGAGGCATGGAAGAAGGTTTTTGGTCCAGTTTTCATCTATGTGAATTCTCCTTATGATGGAGATAACCCCCTTAAGCTATGGGAAGACGCTAAACTCCAGATGTTGGTGGAAGTACAAAGCTGGCCCTACAGTTTTCCTGAATCAGATGATTTTCCTAAGTGGGACGAACGCGGCAATCTTAGTGGCAGGCTATTGGTTAGAGAGAAGAATATAAGCGAAGAAGACTATGTATCAGCCAAAGGCGCCTATGTTGGCTTGGCTCCACCAGGCGACGTTGGTTCATGGCAAAGAGAATGCAAGGATTATCAGTTCTGGACTAAAGCAGATGATGAGGGCTATTTCTCCATTAGCAATATACGTCCTGGTGACTATAGTTTATATGCATGGGTACCTGGTTTTATTGGTGACTACAAATATGATGTAGTTATGAGCATAACAGAAGGCTCTTACATTGACATCGGTACTCTTGCATATGACGCCCCAAGAGATGGTCCAACATTGTGGCAAATAGGCATCCCTGATCGCTCAGCTGCTGAGTTCTGTGTTCCTGATCCAAATCCCAAATATATCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAGTATGGATTATGGGAGAGATATGCAGAGTTATACCCTGACAAAGACTTGATCTACACAGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCCGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAGTCAAATTTCAGCTTCACAATGTGGACAAAAGCAGCACCTATAAACTGCGAGTGGCTTTGGCATCAGCATCATTATCTGAACTCCAGGTTCGAGTTAATGATCCAAAGGCAACCCGTCCTCTATTTTCAAGTGGGTTAATAGGAAGGGATAACGCAATTGCAAGGCACGGAATTCATGGACTTTATTGGCTTTACAATGTGGACATACCAGGTGCTAGACTTGTTGCAGGAGATAATACCATCTTTTTGACTCAGGCAAGAGGCAATAGCCCATTTCAGTACATTATGTATGATTACATTCGTCTCGAAGGTCCACCAAGCTTGAGCAAGAAAAATTGA 2064 0.4341 MSLYNVIDCCFTRTLLSDRRLSLRNSNFSGSLKVPPCHHAAARGLQDIHLCSGKKLHVQVVMDNGILSVTLSNPGGIVTGIQYNGIDNLLEVLNEESNRGYWDLVWSSPTTPGTSGIFDVIRGTAFKVIVENEDQVEISFTRTWDTSLQAKMVPLNIDKRFIMLRGSSGFYSYAIYEHLIDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLLPRGQPLAYPEAVLLVDPVEPELKGEVDDKYQYSCDNKDNQVHGWICMDPAVGFWVITPSDEFRSGGPVKQNLTSHVGPTSLAVFLSPHYSGEDLVPKIKAGEAWKKVFGPVFIYVNSPYDGDNPLKLWEDAKLQMLVEVQSWPYSFPESDDFPKWDERGNLSGRLLVREKNISEEDYVSAKGAYVGLAPPGDVGSWQRECKDYQFWTKADDEGYFSISNIRPGDYSLYAWVPGFIGDYKYDVVMSITEGSYIDIGTLAYDAPRDGPTLWQIGIPDRSAAEFCVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQVKFQLHNVDKSSTYKLRVALASASLSELQVRVNDPKATRPLFSSGLIGRDNAIARHGIHGLYWLYNVDIPGARLVAGDNTIFLTQARGNSPFQYIMYDYIRLEGPPSLSKKN* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1185 687 SUPERFAMILY Galactose mutarotase-like 63 339 IPR011013 GO:0003824|GO:0005975|GO:0030246
Dod09g1185 687 SUPERFAMILY Galactose-binding domain-like 486 678 IPR008979 -
Dod09g1185 687 Pfam Rhamnogalacturonate lyase family 53 248 IPR010325 -
Dod09g1185 687 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 682 - -
Dod09g1185 687 Gene3D - 379 472 - -
Dod09g1185 687 SUPERFAMILY Starch-binding domain-like 423 469 IPR013784 GO:0030246
Dod09g1185 687 Pfam Polysaccharide lyase family 4, domain II 403 474 IPR029413 -
Dod09g1185 687 CDD RGL4_N 59 349 - -
Dod09g1185 687 Gene3D - 487 678 - -
Dod09g1185 687 Gene3D - 52 346 IPR014718 GO:0030246
Dod09g1185 687 CDD RGL4_M 379 479 IPR029413 -
Dod09g1185 687 Pfam Polysaccharide lyase family 4, domain III 489 677 IPR029411 -
Dod09g1185 687 CDD RGL4_C 491 678 - -
Dod09g1185 687 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1185 Dod-Chr9 32785758 32792163 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1185 59 680 Polysaccharide Lyase AT1G09890 70.833 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1185 K18195 - gmx:100793563 1159.82