Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1184 ATGTCCATCCAAGGTGTACGGTTGCACATCCGAGATGGCTATGTGGTGATGGATAATGGCATAGTCCAAGTAACATTATCAAATCCAGATGGAATTGTTACTGGGATACAATATAATGGTCTTGACAATTGCCTTGAAGTTCTCAACAAGGAGACTAACAGAGGGTACTGGGACCTTGTTTGGAGTCCTCCAGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACGTGTTTCAGAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCATTCACAAGAATGTGGGATCGTTCTCTTGAGGGAAAGTTTGTCCCCTTGAATATTGACAAAAGATTCATAATGCTCCGTGGTTCATCTGGCTTCTACTCTTATGGAATATATGAGCACTTAAGTGGATGGCCAGATTTTGATATTGGTGAAACAAGGATCACTTTCAAACTTCGGAAATACAAGTTTCATTACATGGCTGTGGCAGACAATAGACAAAGGATTATGCCTCTTCCAGATGATCGGTTACCTGGAAGATGCCAAAGCTTGGCCTACCCAGAAGCTGCTCTACTAGTCAATCCCAAGGATCCACGACTGCAAGGCGAGGTAGATGACAAATATCAGTATTCGTGTGAAAACATAGATAATCGAGTCCATGGGTGGATATCTTCCAATCCACCTGTGGGATTCTGGCAGATCACACCTAGTGATGAGTTCCGTTCTGGTGGACCCCACAAGCAGAATTTGACCTCACATGTAGGCCCCACCACGCTTGCAATGTTTCTTAGTGGTCACTATGCGGGACAAGATTTGGTGCCCAAATTTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATTTATTTACCTTAATTCTGGAGCAAGTGACGACCTGAGTTGGCTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATTCGTTCCCTGCTTCAGAGGATTTTCCAAAGTCAGATCAAAGGGGCAATGTCAGTGGCAGACTACTTGTTTTAGACAGGTACATCAGCATGGACTTAATATCCGCAAATGGTGCTTATGTTGGTCTAGCCCCACCAGGAGATGTAGGGTCATGGCAAAGAGAATGCAAGCACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACGATCAGGAATATACGTGCAGGCGACTATAACCTTTATGCTTGGGTTCCTGGTTTTGTTGGGGACTACAGATTTGATGATTTTATGAAGATAACCTCAGGTTCTTATATTGAATTGGGTCAGCTTGTATACGAGCCTCCGAGGGATGGTCCCACATTGTGGGAAATTGGTATTCCTGATAGATCTGCTGCAGAGTTTTATGTTCCTGATCCCAATCCACTATATGTTAATAAGCTTTTCATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTACACAGAAATGTATCCTGATGCAGATTTGGTTTACACTATTGGTGTTAGTGACTACACAAAGGATTGGTTTTTCGCTCACATTCCCAGAAAAAAAGAGGATAATACTCATCAAGGAACAACTTGGCAAATCAAGTTTGAAGTCAGTAGTTTGGTTCAGGGAAGTACATATAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTAAATGATCCCAATGCAAGGCGTCCAGTGTTTACCACTGGGTTAATAGGAAGGGATAACTCAATTGCAAGGCATGGAATTCATGGACTCTATTGGCTGTACAATGTGAATGTACCTGGTTCTCTCCTTGTTAATGGGAGGAATACTTTGTATTTTACGCAACCACGATGCACCAGTTGCTTCCAGGGTATCATGTATGATTATATTCGTTTGGAAGGTCCACCTTGTTTCCAAGAAGATCTTTAA 1914 0.4237 MSIQGVRLHIRDGYVVMDNGIVQVTLSNPDGIVTGIQYNGLDNCLEVLNKETNRGYWDLVWSPPGSKGIFDVIKGTCFRVIVQNEEQVELSFTRMWDRSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLSGWPDFDIGETRITFKLRKYKFHYMAVADNRQRIMPLPDDRLPGRCQSLAYPEAALLVNPKDPRLQGEVDDKYQYSCENIDNRVHGWISSNPPVGFWQITPSDEFRSGGPHKQNLTSHVGPTTLAMFLSGHYAGQDLVPKFRGGEPWKKVFGPVFIYLNSGASDDLSWLWEDAKIQMMNEVQSWPYSFPASEDFPKSDQRGNVSGRLLVLDRYISMDLISANGAYVGLAPPGDVGSWQRECKHYQFWTRADENGFFTIRNIRAGDYNLYAWVPGFVGDYRFDDFMKITSGSYIELGQLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPLYVNKLFINHPDRFRQYGLWDRYTEMYPDADLVYTIGVSDYTKDWFFAHIPRKKEDNTHQGTTWQIKFEVSSLVQGSTYKLRVAIASATLAELQIRVNDPNARRPVFTTGLIGRDNSIARHGIHGLYWLYNVNVPGSLLVNGRNTLYFTQPRCTSCFQGIMYDYIRLEGPPCFQEDL* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1184 637 Gene3D - 327 421 - -
Dod09g1184 637 Pfam Polysaccharide lyase family 4, domain II 353 425 IPR029413 -
Dod09g1184 637 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 - -
Dod09g1184 637 SUPERFAMILY Starch-binding domain-like 373 424 IPR013784 GO:0030246
Dod09g1184 637 Gene3D - 437 628 - -
Dod09g1184 637 SUPERFAMILY Galactose mutarotase-like 18 299 IPR011013 GO:0003824|GO:0005975|GO:0030246
Dod09g1184 637 CDD RGL4_C 441 628 - -
Dod09g1184 637 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 - -
Dod09g1184 637 Pfam Polysaccharide lyase family 4, domain III 439 627 IPR029411 -
Dod09g1184 637 SUPERFAMILY Galactose-binding domain-like 436 628 IPR008979 -
Dod09g1184 637 CDD RGL4_M 330 429 IPR029413 -
Dod09g1184 637 CDD RGL4_N 6 296 - -
Dod09g1184 637 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Dod09g1184 637 Gene3D - 9 307 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1184 Dod-Chr9 32778370 32784290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1184 1 631 Polysaccharide Lyase AT1G09910 72.310 0.0 963
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1184 K18195 - gmx:100814185 1174.84