Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1182 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGACAACTCAACGAGCAGGCAGGTGACGTTCTCGAAGCGAAGAAGTGGTTTGCTGAAGAAGGCGAAGGAGCTTTCGATCCTGTGCGATGCTGAGGTTGGAGTCATGATCTTCTCCAGCACCGGAAAACTATACGATTTCGCCAACACCAGTCTTAAATCAGTAATTGATCGATACAACAAAACAAAAGAGGAGCAAAATCCACTAGGGAGTTCAACCTCTGAAATGAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTGCAAAACTTGCAAGAAAGTCACCGGCAAATGATGGGAGAAGAACTGTCAGGTTTGACTGTCAAAGAATTACAGAGTTTGGAGAACCAACTGGAAATTAGTCTCCATGGTGTCCGTGCGAAAAAGGAACAACTTTTGATGGACGAAATACAGGAACTAAATCAAAAGGGAAACCTCATACACCAAGAAAATATGGAACTGTATAAGAACGTAAACCTAATTCGTCAAGAAAACATGGAATTGAAGAAAAAGGTCTACGGAACAAGAGGGGGGAATGGAACAGACAGAAATTCTGTTCCCACTAATGGCCTACGCATAGGAGATGATTCGCAGGTTCCTGTGAATCTCCAGCTAAGCCAACCACAGCAACAGAACTATGAGGCACCTTCAAGAGTTACAAAATTGGGATTGCAACTACAATGA 720 0.4347 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVMIFSSTGKLYDFANTSLKSVIDRYNKTKEEQNPLGSSTSEMKFWQREAAMLRQQLQNLQESHRQMMGEELSGLTVKELQSLENQLEISLHGVRAKKEQLLMDEIQELNQKGNLIHQENMELYKNVNLIRQENMELKKKVYGTRGGNGTDRNSVPTNGLRIGDDSQVPVNLQLSQPQQQNYEAPSRVTKLGLQLQ* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1182 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod09g1182 239 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Dod09g1182 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 237 - -
Dod09g1182 239 MobiDBLite consensus disorder prediction 190 204 - -
Dod09g1182 239 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 237 - -
Dod09g1182 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod09g1182 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod09g1182 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod09g1182 239 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Dod09g1182 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod09g1182 239 Coils Coil 163 183 - -
Dod09g1182 239 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Dod09g1182 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod09g1182 239 MobiDBLite consensus disorder prediction 184 208 - -
Dod09g1182 239 Coils Coil 86 113 - -
Dod09g1182 239 MobiDBLite consensus disorder prediction 220 239 - -
Dod09g1182 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod09g1182 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod09g1182 239 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1182 Dod-Chr9 32717553 32743903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1182 1 231 MADS-box Gene Family AT4G37940 59.740 6.79e-93 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod09g1182 K-box 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1182 K09264 - gmx:100812413 385.185