Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1176 ATGGAGCTCTATGACCATGATTGCTTGGAGGAACTAATGGCTCTAAGAAGAGAAACATGGGAAACCAATCCAAGTACAGTAGAGAACCAGTTCTTCCCAAATGGCTGGGGTTTTGACTGTTTTGATCAAAACTCTCAAGCCTTTCTCCCAAACTCTTCTTTTGGTCAAGATGTTCCTCAGTGTTACAATGACTACACATTCAATGAAATCTATGACTCCTTATTACTTGATGAACCCTCCCCACCACAAATCATGGATTCATACTATAACAACACCCTTGATACCTCACTTGATACCCCTCCATTTCTTGCTCAAGAAGACTATCCATTGTCCATGATGGAGGAAGAGGATCATGGTAATTTGCTTGGGGAGGAGCTTCAGAATTTGGAGCTGCAAACCAAATGCAAAGTGGAGCCAATAACTCAGTCCCCTGAAATGCCAGCTTTCAACCATGGTGTGGGCCTGGAAAGAAAGAACCGAGCCAAGAAGCTTCAGGGGCAACCCTCCAAGAATCTAATGGCTGAGAGGAGAAGAAGAAAGAGATTAAACGACAGACTCTCAATGCTAAGAGCCATTGTCCCTAAGATAAGTAAGATGGACAGAACTGCTATACTTGGAGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATCAACAATTTGCAGCAAGAAATTAAAGTAGATTCAAACATGGCAGGCATTTTCAAAGATGTAAAGCCAAATGAAATCTTAATCAGAAATTCACCCAAGTTTGAAGTTGAGAGGGGTGTGGACACCCGGGTTGAAATTTGCTGTGCCGGGAAGCCAGGCTTGTTGCTATCTACAGTGAGCACCCTGGAAGCATTAGGCCTTGATATTCAACAATGTGTCATTAGCTGTTTCAACGATTTCACAATGCAAGCTTCTTGCTCAGAGGAATTGGAGCAAAGGGAAATGCTGAGTTCTGAAGACATAAAGCAAGCGTTATTTAGAAGTGCAGGATATGGAGGAAGATGTCTGTGA 1005 0.4249 MELYDHDCLEELMALRRETWETNPSTVENQFFPNGWGFDCFDQNSQAFLPNSSFGQDVPQCYNDYTFNEIYDSLLLDEPSPPQIMDSYYNNTLDTSLDTPPFLAQEDYPLSMMEEEDHGNLLGEELQNLELQTKCKVEPITQSPEMPAFNHGVGLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIKVDSNMAGIFKDVKPNEILIRNSPKFEVERGVDTRVEICCAGKPGLLLSTVSTLEALGLDIQQCVISCFNDFTMQASCSEELEQREMLSSEDIKQALFRSAGYGGRCL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1176 334 CDD ACT_UUR-ACR-like 260 301 - -
Dod09g1176 334 Gene3D - 156 230 IPR036638 GO:0046983
Dod09g1176 334 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Dod09g1176 334 Coils Coil 205 232 - -
Dod09g1176 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 227 IPR036638 GO:0046983
Dod09g1176 334 SMART finulus 172 221 IPR011598 GO:0046983
Dod09g1176 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Dod09g1176 334 PANTHER DNA BINDING PROTEIN 3 334 - -
Dod09g1176 334 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1176 Dod-Chr9 32633235 32635165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1176 29 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 45.427 7.49e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod09g1176 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1176 - - gmx:100812578 531.176