Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1175 ATGTCTCCGCTGGTGCTCGGCATAGGGGAGGAGGAAGGCAAAAGCAATGCCACTTTGTTGGTTTCCTCAACCAACATGGAAAGTGTATGCATCAAGAGCTCGGAATTAAAAGAACGCAACTACATGGGATTGTCGGATTGTTCTTCTGTGGACAGCTCTGTTCCATTATTCTCGGATGAGAGTAAGAGTAACCTGAACCTGAAAGCTACAGAACTCAGGCTTGGACTTCCAGGATCTCAGTCTCCTGAGAGAGATTCTGATCATTGCTTGAGAAACTCGACTCAATTTGATGAAAAACCTCTGTTTCCTTGGCGCCCCTCAATTGATGATCACCACTCCTCAGCAAAGGCTGCTGTTTTGGGTAACAAGAGAGGGTTCTCAGATGCCATGAATGGGTTCCCAGAGGGGAAATTCCTAGTTAATTCGGCGGCGAGTACGATACTGTCACCAAGGCCTTCTTCTAACTTAGGATTAAAACCCGGTTCTATGCTTGAGAAAGTTGGGGCTCAACAAGCCAGAATGAAAGAAGTAGCAGCTACAAAGGTCGGGGTTGAGAAGCCTAATGAAACCGGACCGACTCTTAATGGTTCCACAAATAATAATAACAGTGCACCGGCTACCAAGGCTCAGGTAGTGGGGTGGCCACCTATAAGATCATTTAGGAAAAATTCCTTGGCTACTAATTTAAAGAACACCGAAGAAGCAGATGGAAAAGTGGGATCTGGTGCACTGTTTGTCAAGGTCAGTATGGATGGTGCCCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATATCCAGAACTATCTTCTGCTCTAGAGAAGATGTTCAGCTGTTTTACTATAAGTCAATGTGGATCTCATGGAACTCTGGGCAGGGAGATACTGAATGAAACCAAGCTGAAGGATCTTCTTCATGGGTCAGAATATGTTCTTACTTATGAAGACAAAGACGGCGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTTATTGAAACATGCAGGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCAAGGGCTGTTGAAAAGAGCAAGAGCAGGAACTAG 1092 0.4515 MSPLVLGIGEEEGKSNATLLVSSTNMESVCIKSSELKERNYMGLSDCSSVDSSVPLFSDESKSNLNLKATELRLGLPGSQSPERDSDHCLRNSTQFDEKPLFPWRPSIDDHHSSAKAAVLGNKRGFSDAMNGFPEGKFLVNSAASTILSPRPSSNLGLKPGSMLEKVGAQQARMKEVAATKVGVEKPNETGPTLNGSTNNNNSAPATKAQVVGWPPIRSFRKNSLATNLKNTEEADGKVGSGALFVKVSMDGAPYLRKVDLKNYSTYPELSSALEKMFSCFTISQCGSHGTLGREILNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCRRLRIMKSSDAIGLAPRAVEKSKSRN* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1175 363 PANTHER AUXIN-INDUCED PROTEIN 17 357 - -
Dod09g1175 363 MobiDBLite consensus disorder prediction 190 208 - -
Dod09g1175 363 Pfam AUX/IAA family 70 354 IPR033389 -
Dod09g1175 363 ProSiteProfiles PB1 domain profile. 243 345 IPR000270 GO:0005515
Dod09g1175 363 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 357 IPR003311 GO:0005634|GO:0006355
Dod09g1175 363 MobiDBLite consensus disorder prediction 185 208 - -
Dod09g1175 363 Gene3D - 238 357 - -
Dod09g1175 363 SUPERFAMILY CAD & PB1 domains 241 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1175 Dod-Chr9 32591348 32595952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1175 246 348 B3 DNA Binding Superfamily AT2G46530 33.981 5.18e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod09g1175 AUX_IAA 3.5e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1175 K14484 - gmx:100783314 582.793