Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1120 ATGGAAGCACAGGAGCTCTTCCAGAGCGGCTTCTGCACACAATTTCCTTCCTCCTCCTCCGACAACAACAACAACAATAACGCCCCTAATTCCGACCACTTCATCGTCGAGGACCTCTTCGACTTCTCCAACGACGACGCTGCCCCTGTCATCCCCGACAACAACACCACCGCCACCTTCGACTCCCTTAATGGCAACTCCACCGACGCCCTCGATAGCGCCAATTCCTCCGCCTCCCCCCCCAATTTCCTCACCGCCGACGCCCATTTCGCCAGTGACCTCTCCGTCCCGTATGATGATCTTGCGGAGCTGGAATGGCTGTCCAATTTCACGGAGGAGTCATTTTCGAGCGAGGACATGCAGAAGATGCAGCTCATAACGGGCATGAAGGCCCGGAACGACGCCGTTTCAGAGGCCTGTGAATTCCAGCCCGAGCCCAACCGAAGCAACCCGGTGCTAAGCCCGCAAGTGTCGGTTCCGGCCAAGGCCCGCAGCAAGCGCTCACGTGGGCCCCCATGCAACTGGACCTCTCGCCTCCTCGCCCTCTCCCCGACGACCTCGTGTTCACAGCCCGAACCCGCAGTCGGCCCCACGAAGAAGCCCGCGCCGCGGAAGAGGGACACAGGCGAGGGCCGGAAGTGCCTGCATTGCGCCACAGACAAGACGCCCCAATGGAGGACCGGGCCCATGGGCCCGAAGACGCTGTGCAACGCTTGCGGCGTGAGGTATAAGTCGGGCAGGCTTGTGCCCGAGTACAGGCCCGCGGCGAGCCCGACGTTCGTGCTGACGAAGCACTCGAACTCGCACAGGAAGGTGCTGGAGCTGCGGCGCCAGAAGGAGATGATGATGATGCGGGCCCAGCAGCAGCATCAGCAGCAGCTCCTGCATCATCACCATCACCACCAGGGCATGATGTTCGATGTCTCATCCAACGGTGACGATTACTTGATCCATCAACACGTGGGCCCCGATTTCGCTCAGCTGATCTAG 990 0.6091 MEAQELFQSGFCTQFPSSSSDNNNNNNAPNSDHFIVEDLFDFSNDDAAPVIPDNNTTATFDSLNGNSTDALDSANSSASPPNFLTADAHFASDLSVPYDDLAELEWLSNFTEESFSSEDMQKMQLITGMKARNDAVSEACEFQPEPNRSNPVLSPQVSVPAKARSKRSRGPPCNWTSRLLALSPTTSCSQPEPAVGPTKKPAPRKRDTGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMMMRAQQQHQQQLLHHHHHHQGMMFDVSSNGDDYLIHQHVGPDFAQLI* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1120 329 MobiDBLite consensus disorder prediction 142 211 - -
Dod09g1120 329 Pfam GATA zinc finger 214 247 IPR000679 GO:0006355|GO:0043565
Dod09g1120 329 MobiDBLite consensus disorder prediction 178 193 - -
Dod09g1120 329 CDD ZnF_GATA 213 260 IPR000679 GO:0006355|GO:0043565
Dod09g1120 329 ProSitePatterns GATA-type zinc finger domain. 214 239 IPR000679 GO:0006355|GO:0043565
Dod09g1120 329 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 272 - -
Dod09g1120 329 PANTHER GATA TRANSCRIPTION FACTOR 1 329 - -
Dod09g1120 329 MobiDBLite consensus disorder prediction 7 31 - -
Dod09g1120 329 MobiDBLite consensus disorder prediction 1 31 - -
Dod09g1120 329 Gene3D - 208 258 IPR013088 GO:0006355|GO:0008270
Dod09g1120 329 PANTHER GATA TRANSCRIPTION FACTOR 1 329 - -
Dod09g1120 329 PIRSF Txn_fac_GATA_plant 1 304 IPR016679 GO:0003677|GO:0005634|GO:0045893
Dod09g1120 329 ProSiteProfiles GATA-type zinc finger domain profile. 208 244 IPR000679 GO:0006355|GO:0043565
Dod09g1120 329 SMART GATA_3 208 258 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1120 Dod-Chr9 31879228 31881018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1120 34 329 C2C2-Gata Transcription Factor Family AT5G25830 51.807 3.30e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod09g1120 GATA 3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1120 - - zju:107420464 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1120 09 31879228 31881018 Dod09g1120 09 31879228 31881018 ECH