Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1103 ATGTCCAAGCCCAAAGCAGCGGTGAGGAAAACATGCCAGATTTTCCTCAGACCTGCGCATCCAAGCAACGCGCTTGTGATATCAGTCCTCACCATAATGTTCGCCGTGACATTCCTCTTACTAGCCTATGTCAAATTCTGCCGAATTAGCCCTACTGGGGATATGACTATGAACCCAAACCACAACAACAACAGCCCCCAAAACTTTCATGGACTAACTCGATCATGTTCTAGATTTTCCGGAATAGACAAACAGGTGATTGAGACACTCCCGTTCTTCAAGTTTTCTTCCCTTAAAGGGTCCAAAGAAGGCCTAGAATGCACCGTTTGCTTGTCCAAATTCGAGGACTCCGAGATTCTCAGATTGCTTCCAAAGTGCCAGCACGCTTTCCACATGAGTTGCATTGACATGTGGCTCGAGAGCCACTCCACGTGTCCTCTTTGCAGGTACAGGGTTGAACCAGGGGACATCAAGAACTTCAACTTCTCACTCAGCTCAAGGTTCCTCCGAGTCCCTTCGAACTTAAACGAGGACCCAAACGTTGAAATATATGTCCAGAGGGAGCCATCTCATCGAGGGTCGTCGAGATTCAGCGTTGAAAGTATCAGCAAGATACAAGAACCACTGATTGATGATCAAGAGTGGTGGTGGTAG 654 0.4755 MSKPKAAVRKTCQIFLRPAHPSNALVISVLTIMFAVTFLLLAYVKFCRISPTGDMTMNPNHNNNSPQNFHGLTRSCSRFSGIDKQVIETLPFFKFSSLKGSKEGLECTVCLSKFEDSEILRLLPKCQHAFHMSCIDMWLESHSTCPLCRYRVEPGDIKNFNFSLSSRFLRVPSNLNEDPNVEIYVQREPSHRGSSRFSVESISKIQEPLIDDQEWWW* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1103 217 Pfam Ring finger domain 106 149 IPR001841 -
Dod09g1103 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 156 IPR013083 -
Dod09g1103 217 SMART ring_2 107 148 IPR001841 -
Dod09g1103 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 205 - -
Dod09g1103 217 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Dod09g1103 217 PANTHER RING-H2 FINGER PROTEIN ATL4J 13 205 - -
Dod09g1103 217 CDD RING-H2_EL5_like 106 149 - -
Dod09g1103 217 SUPERFAMILY RING/U-box 86 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1103 Dod-Chr9 31697899 31698552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1103 21 198 C3H Transcription Factor Family AT2G20030 51.934 9.79e-55 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1103 K10664 - gmx:100816668 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1103 09 31697899 31698552 Dod08g1480 08 30598777 30599931 PCT