Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1078 ATGGAAGGTGACAGGAAAATCCCTGCTGCTCCATCAAATGGGGTTGTTGATGGTGTTCAGAAAATTAGAGCACTACATGGGAGGACGACTGGCCCTACAAGGCGTTCTACCAAAGGACAATGGACAGCTGAAGAGGATGAGATTTTGCGTAAGGCTGTTCAGCGTTTTAAAGGAAAGAATTGGAAAAAAATAGCCGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGATGGCAAAAAGTCTTAAATCCAGAACTTGTGAAAGGTCCATGGTCTAAGGAGGAAGATGAAGTAATTATTGAACTAGTGAACAAATATGGGCCTAAAAAGTGGTCTACTATCGCACAGCATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCAATAAACAAGGAAGCATGGACGCAGGAAGAGGAGTTGGCTCTAATTCGTGCTCATCAGATTTATGGGAACAGATGGGCAGAATTAACAAAGTTCTTACCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAATAGTTCTGTGAAAAAGAAATTGGATTCTTACTTGGCATCAGGCTTGCTTACTCAGTTACAAAATGCACCACTTGTTGCAAATCCTAATCAACCCATGGCTTCAACCTCTTCAAGGTTGCAGTCTAGTGGAGATGATAATGGTCCTAGGGGAACTGAAGGAGAGGAAGTTTCACAATGTAGTCAGGAGTCAGCCAATGCTGGTCACTTTGCATCTGCCAAAGATATGAGCAATGTTGTTTTACAAGCTAGAGAGGAATACAGACCAAGTGAAGAATATAGTCTTGGAAAGGATTATAGTCCTAGTCAAGCTTCCTGTTCAGAGCCATATTATGTATCCCTGGATGATGTCACTGTATCCATCCCCAACATAGCTCGCCAAGAAACTTGCTCTTCTCAATTCGTTGAGCAGACCTACTCCCAAGAACCTGGAAATTTGACAAATGGGGATTGCCAGCTTAATTTACTTGCCTTACCCAATATTTCCTCCCTGGACTTTGGGCAGGAGTCTGCACAGTTGCAAAATGATTGTATGGCTCCTAGTGAAAGTCATGACATGGTGAATGATCCATTTCAGACTTCTGTGGATTTCGGTGTTTCAGCATCCATGGGACCTACATCTATGGACTCTCTACGAGAGCACATGTTGATATCTGATGATGAATGTTGCAGAGTCTTGTTTTCAGAGGCAATGAGTGAGGAATGCTTTTCCTCAGCAGATTATAATAAAGGTGTAAATATGGTTGACTTGTCTGGATACGCTTCATTTCTCTGCCAGTCGTCTTTACCCTCTACCTCATCAGTACCTACTGCTAATGATGGTAGGTTGCGGAATACTTCCGAAGTAAATCAGTTAATTCAGTCCGAGAATCAGCAGTCTGTCTCCAGAGCTCATGACATGTATGCCAATGATCTATCGAGTTCTCCTTGTATTGATGGGATATATAATGCAGAAATTCAAGAGTCATCCAACACAGTGAAGGATTCTTCAAAATTGGTCCCTGTAAATAGTTTTGGCTGTGAATCAGAGACTAAGCAAACATGCAATCCAACGGACAAAAAGCCAAATGAGCATTCAGAACGGGAAGACATGGGAGCTCTATGTTATGAACCTCCTCGTTTTCCAAGCTTGGATATTCCTTTCTTCAGCTGTGATCTTATACAATCTAGTGGTGATATGCAGCAAGAATTTAGTCCTCTTGGTATCCGCCAGTTTATGATGTCTTCTATGAATTGTTTAACTCCCTTCAGGTTGTGGGACTCTCCTTCTCGCGATAAAACTAGTCCGGATGCTTTGTTGAAAAGTGCTGCTAAAACTTTCACAGGTACACCATCCATATTAAAGAAACGACACCGAGATCTTTTATCTCCACTATCAGATAAGAGAGTTGACAAGAAACTTGAGATTGACATGACATCCACCTTGATTAAAAATTTTTCCCGTCTGGATGTTATGTTTGATGATGAGATAAGGGAAGCAGATTTGCTTTCTCCATCTTCAATGAAGAAAAAGAACTCCAGTACCTCTGTTGAAGATGATAAAGAAAACTGTGGACAGTCTTCAAAAGTGGAACAAAAAGAGGAGAAAAATAAATACGCAATTTTGAACAACAATGAGTCAGAAGAAGATAAAGGTGCCAATGATTCTCAGGGTAAGACTGAACAGCGACCTCTTGATGTTGATTCTAAGAAGAGTGATATTAATGCTACTGAAATTGTGCAACAACCTTCCGGAGTCTTGGTTGAGCATGATCTGAATAACCTGCTACTGGATTCTCCTGATCAAGTTGGTTTTAAATCAGACAGAGTATTAAGTGCTAGAACTAATAGAAATCCATGTTCAAGTATTAACTCTCCTTCTATTCGAGTAAAGGAGAATGAGAGACTTTCAATCGCTGTTACCTGTGTACAGTCTGTCAGTTCATCAGCCGCTGGAGAGAATTTGGGTGATCAAACCGGAAAGGATGGAGGTTTCGAAACGTGCAGCATATTCGGTGGAACACCTTTTAGGAGAAGCCTTGAATCACCTTCAGCGTGGAAATCTCCTTGGTTCATCAACACATTTCTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGGATTTTGGGTATTTCATGAGCCCATGTGATAGAAGCTATGATGCAATCGGGTTGATGAAACAGGTCAGCGAACAAACTGCTGCTCAATATGCCAATGCTCATGAGGTTTTGGGAAATGAAACTCCTAAGGCGTTGCTGAAAGATGCGTCTGGAAATGACAGGGAAGAGGATAAGGAAAATAACAATCCTCAGGCACAACCTGGGAATCATTCTCAGTTGACTTCAAAAGCTTTGGTGGAGCGACGCGTACTTGACTTCAGTGAATGTGAATCACCGGGCAAGGGTGATAGCAGCAAATCCGCAGCTATGAGCGTCCAAAGCCCTTCTTCATATTTGTTGAAGGGTTGTAGATAG 3006 0.4162 MEGDRKIPAAPSNGVVDGVQKIRALHGRTTGPTRRSTKGQWTAEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVIIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIRAHQIYGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQNAPLVANPNQPMASTSSRLQSSGDDNGPRGTEGEEVSQCSQESANAGHFASAKDMSNVVLQAREEYRPSEEYSLGKDYSPSQASCSEPYYVSLDDVTVSIPNIARQETCSSQFVEQTYSQEPGNLTNGDCQLNLLALPNISSLDFGQESAQLQNDCMAPSESHDMVNDPFQTSVDFGVSASMGPTSMDSLREHMLISDDECCRVLFSEAMSEECFSSADYNKGVNMVDLSGYASFLCQSSLPSTSSVPTANDGRLRNTSEVNQLIQSENQQSVSRAHDMYANDLSSSPCIDGIYNAEIQESSNTVKDSSKLVPVNSFGCESETKQTCNPTDKKPNEHSEREDMGALCYEPPRFPSLDIPFFSCDLIQSSGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDKTSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRVDKKLEIDMTSTLIKNFSRLDVMFDDEIREADLLSPSSMKKKNSSTSVEDDKENCGQSSKVEQKEEKNKYAILNNNESEEDKGANDSQGKTEQRPLDVDSKKSDINATEIVQQPSGVLVEHDLNNLLLDSPDQVGFKSDRVLSARTNRNPCSSINSPSIRVKENERLSIAVTCVQSVSSSAAGENLGDQTGKDGGFETCSIFGGTPFRRSLESPSAWKSPWFINTFLSSPRIDTEITIEDFGYFMSPCDRSYDAIGLMKQVSEQTAAQYANAHEVLGNETPKALLKDASGNDREEDKENNNPQAQPGNHSQLTSKALVERRVLDFSECESPGKGDSSKSAAMSVQSPSSYLLKGCR* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1078 1001 CDD SANT 41 84 IPR001005 -
Dod09g1078 1001 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 191 IPR017930 -
Dod09g1078 1001 MobiDBLite consensus disorder prediction 977 995 - -
Dod09g1078 1001 MobiDBLite consensus disorder prediction 931 945 - -
Dod09g1078 1001 SUPERFAMILY Homeodomain-like 87 183 IPR009057 -
Dod09g1078 1001 Pfam Myb-like DNA-binding domain 38 84 IPR001005 -
Dod09g1078 1001 Pfam Myb-like DNA-binding domain 142 184 IPR001005 -
Dod09g1078 1001 Pfam Myb-like DNA-binding domain 90 136 IPR001005 -
Dod09g1078 1001 CDD SANT 92 136 IPR001005 -
Dod09g1078 1001 MobiDBLite consensus disorder prediction 689 747 - -
Dod09g1078 1001 MobiDBLite consensus disorder prediction 925 1001 - -
Dod09g1078 1001 PANTHER TRANSCRIPTION REPRESSOR MYB5 9 1000 - -
Dod09g1078 1001 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Dod09g1078 1001 MobiDBLite consensus disorder prediction 210 254 - -
Dod09g1078 1001 Gene3D - 143 206 - -
Dod09g1078 1001 SMART sant 37 86 IPR001005 -
Dod09g1078 1001 SMART sant 141 189 IPR001005 -
Dod09g1078 1001 SMART sant 89 138 IPR001005 -
Dod09g1078 1001 MobiDBLite consensus disorder prediction 946 960 - -
Dod09g1078 1001 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Dod09g1078 1001 MobiDBLite consensus disorder prediction 210 251 - -
Dod09g1078 1001 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 84 IPR017930 -
Dod09g1078 1001 ProSiteProfiles Myb-like domain profile. 137 187 IPR001005 -
Dod09g1078 1001 PANTHER MYB PROTEIN-RELATED 9 1000 - -
Dod09g1078 1001 MobiDBLite consensus disorder prediction 680 747 - -
Dod09g1078 1001 ProSiteProfiles Myb-like domain profile. 85 136 IPR001005 -
Dod09g1078 1001 Gene3D - 90 141 - -
Dod09g1078 1001 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 140 IPR017930 -
Dod09g1078 1001 CDD SANT 144 184 IPR001005 -
Dod09g1078 1001 Gene3D - 37 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1078 Dod-Chr9 31456181 31461475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1078 1 1001 MYB Transcription Factor Family AT4G32730 45.143 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod09g1078 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1078 - K09420 gmx:100811335 1539.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1078 09 31456181 31461475 Dod09g1078 09 31456181 31461475 ECH
Dod08g1541 08 34930291 34936546 Dod09g1078 09 31456181 31461475 PCT