Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1050 ATGCAAAAGGAAAAGGAAGCAGTTACCAAGGAGGGGAAAGATATAGAGATGGAAGGGAGTCATGGAAAAAAGGAGGAAACTCTACCACCAGGATTTCGATTTCATCCTACCGATGAAGAACTCATCACTTGCTATCTCATAAATAAGATTTCGGATTCTAATTTTACAGGCAGAGCAATAACTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTGCCAGGGAAGGCAAAGATGGGAGAAAAAGAATGGTACTTCTTCAGCCTGAGAGATCGTAAGTACCCCACAGGTGTGAGAACCAATAGAGCAACGAATACCGGGTACTGGAAGACCACAGGGAAAGACAAGGAGATCCTCAACAGTGTTACTTCAGAATTGGTTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGGAGAGCTCCTAGGGGAGAGAAAAGTAACTGGGTCATGCATGAATACCGCATTCACTCAAAGTCCAGCTTTCGAACTAACAAGGATGAATGGGTGGTTTGCCGTGTATTCCAGAAGAGTGCTGGTGCAAAGAAGTACCCTTCTTCAAACCATGCAAGAGCAGTGAACCCTTTCAGCCTCGAAATAGGCCCAAACATTATGCCACCGCCGATGATGCAACTTGGAGACCCTTCTGCTCATTTCCTCTATGGAAGAAACTACATGAGCAGTGCAGAGCTAGCTGAAGTGGCTAGGGTTTTGAGAGGGGGTGGATCAACCAGCAGTGTCAACCTACCAATGCAAACCCCCTTGAACTACCCAGTAACTGCATCAGGAGCAGGATTCACCATTTCTGGGCTCAATTTGAATCTTGGAGGAGGAGGAGCAGCAGCAGCAGCCACAACACAATCCATTTTAAGGCCAATGCAGCCGTCACCGCCGCCGCCGCTGCATGCTCAGACAATGGCTCAGGTTCATGAAGTGAGTACCAACATGATGACAGCAAGTTCTCTTGGCGCAGAGAATGTTGGTTATGTCACAGAAATGAGCAACGCAAACCCTCATGGCAATAGGTATTTAGGCATGGACCATTGCATGGATCTTGACAATTACTGGCCTTCCTACTAA 1077 0.4661 MQKEKEAVTKEGKDIEMEGSHGKKEETLPPGFRFHPTDEELITCYLINKISDSNFTGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRTNKDEWVVCRVFQKSAGAKKYPSSNHARAVNPFSLEIGPNIMPPPMMQLGDPSAHFLYGRNYMSSAELAEVARVLRGGGSTSSVNLPMQTPLNYPVTASGAGFTISGLNLNLGGGGAAAAATTQSILRPMQPSPPPPLHAQTMAQVHEVSTNMMTASSLGAENVGYVTEMSNANPHGNRYLGMDHCMDLDNYWPSY* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1050 358 SUPERFAMILY NAC domain 21 176 IPR036093 GO:0003677|GO:0006355
Dod09g1050 358 Gene3D NAC domain 37 180 IPR036093 GO:0003677|GO:0006355
Dod09g1050 358 ProSiteProfiles NAC domain profile. 28 176 IPR003441 GO:0003677|GO:0006355
Dod09g1050 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 355 - -
Dod09g1050 358 MobiDBLite consensus disorder prediction 1 32 - -
Dod09g1050 358 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 15 355 - -
Dod09g1050 358 Pfam No apical meristem (NAM) protein 29 155 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1050 Dod-Chr9 30981394 30984605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1050 21 358 NAC Transcription Factor Family AT2G24430 51.801 2.77e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dod09g1050 NAM 4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1050 - - gmx:100804931 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1050 09 30981394 30984605 Dod09g1050 09 30981394 30984605 ECH