LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g1026	ATGCAACAGAGGCTGAAGTTGCAGCAACAACAAGCACTCATGCAGCAAGCTTTGCTTCAGCAACAGCAGATGTACCACCCTGGCATGCTTGCAGCTGCCATGTCTCAGATGGAGCCTGTTCCCGGTGGAAATCTCCCTCCTGGTTTTGACACCTCTGCATGCCGTAGTGTTTATGTCGGAAATATACATGTAAATGTCACCGATAAGCTTCTTGCGGAAGTTTTTCAGAGTGCTGGTCCACTTGCTGGGTGCAAGCTCATAAGAAAAGAAAAGTCTTCTTATGGTTTTGTGGACTACCATGATCGATCTTCTGCAGCCCTTGCAATAATGACTTTGCATGGACGGCAACTATATGGTCAAGCTCTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACTTCAGGGCACTACAATATGTTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCCTTCCGTGATCATCAGGATGCACAAAGTGCCATCAATGATATGACGGGCAAATGGCTGGGAAATAGGCAGATACGATGCAATTGGGCAACCAAGGGTGCTGCTGGCAGCTCCAATGAAGAGAAGAACAATGACAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAGCAACGAGGATGCTCCTGAAAACAATCCTGCGTACACCACTGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAGTTCCATGCACTGGGGGCTGGGGTTATTGAGGAGGTTCGAGTTCAGAGGGATAAAGGCTTTGGATTTGTCAGATACAACACTCATGAGGAAGCAGCATTGGCCATTCAGATGGCTAATGGAAGAATAGTCCGTGGGAAGTCTATGAAGTGTTCATGGGGTAGCAAGCCAACTCCTCCTGGAACAGCTTCAAATCCACTACCCCCTCCAGCTCAACCATATCAGATACTTCCCACTGCAGGGATGAACCAAGGTTATTCTCCTGCTGAGTTGTTGGCTTACCAGCGCCAGCTGGCCTTGAGTCAAGCTGCTGTATCCGGCCTTTCAGGTCAAGCTCTTCTGCAAATGAGTGGACAGCATGGCTTAGCTCCTGCTTCCATGGGCATAAACTCTGGCGCATCTCAAGCCATGTATGACGGATACACTGGTAACTCATCAAGACAGCAGCTTATGTACTACCGTTGA	1305	0.4705	MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPGGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRSSAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHYNMFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAAGSSNEEKNNDNQNAVVLTNGSSDGGQDNSNEDAPENNPAYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRIVRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSGASQAMYDGYTGNSSRQQLMYYR*	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g1026	434	MobiDBLite	consensus disorder prediction	219	261	-	-
	Dod09g1026	434	CDD	RRM2_PUB1	141	215	-	-
	Dod09g1026	434	Gene3D	-	240	340	IPR012677	-
	Dod09g1026	434	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	140	218	IPR000504	GO:0003723
	Dod09g1026	434	CDD	RRM3_TIA1_like	262	336	-	-
	Dod09g1026	434	Gene3D	-	1	137	IPR012677	-
	Dod09g1026	434	SUPERFAMILY	RNA-binding domain, RBD	55	219	IPR035979	GO:0003676
	Dod09g1026	434	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	55	129	IPR000504	GO:0003723
	Dod09g1026	434	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	57	123	IPR000504	GO:0003723
	Dod09g1026	434	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	143	212	IPR000504	GO:0003723
	Dod09g1026	434	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	264	329	IPR000504	GO:0003723
	Dod09g1026	434	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	262	336	IPR000504	GO:0003723
	Dod09g1026	434	Gene3D	-	138	238	IPR012677	-
	Dod09g1026	434	PANTHER	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	4	431	-	-
	Dod09g1026	434	PANTHER	OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1	4	431	-	-
	Dod09g1026	434	SUPERFAMILY	RNA-binding domain, RBD	252	345	IPR035979	GO:0003676
	Dod09g1026	434	SMART	rrm1_1	263	332	IPR000504	GO:0003723
	Dod09g1026	434	SMART	rrm1_1	56	125	IPR000504	GO:0003723
	Dod09g1026	434	SMART	rrm1_1	141	214	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g1026	Dod-Chr9	30711118	30720350	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g1026	56	336	Eukaryotic Initiation Factors Gene Family	AT2G23350	29.795	9.11e-26	108

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g1026	K13201		-	gmx:100777108	838.95