LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g1022	ATGACTCGCGTTTATGTTGGTAATCTGGATTCACGTGTTACTGAGAGAGACCTTGAAGATGAATTCCATGCTTTCGGAGTTATACGCAGTGTGTGGGTTGCACGGAGACCTCCTGGCTATGCTTTTATTGACTTTGATGATCGCAGAGATGCGCAAGATGCTATTCGGGAGTTAGATGGGAAGAATGGATGGAGGGTAGAACTTTCTCACAACTCTAGAGGTGGTGGTGGTGGTCGTGGTCGTTCTGGTGGTGGTGGTGGTGGTGGTGGTTCTGATTTGAAATGTTATGAGTGTGGGGAACCTGGTCATTTTGCTCGGGAATGTCGTATGCGTGGCAGTTCTGGAAGACGTCGTAGCCGTAGTCCACCTCGATTCCGCAGGAGCCCGAGTTATGGTCGAAGGAGTTACAGTCCTCGTGGCCGGTCCCCTAGGCGCCGCAGCTTGTCACCTCGTGGACGCAGCTATAGCAGGTCACCTCCTTACCGTGGGCGGGAGGAGCTAACATATGCTAATGGAAATGGCTTAAGGGATTGA	534	0.5169	MTRVYVGNLDSRVTERDLEDEFHAFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGRSGGGGGGGGSDLKCYECGEPGHFARECRMRGSSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREELTYANGNGLRD*	178

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g1022	177	SUPERFAMILY	RNA-binding domain, RBD	2	89	IPR035979	GO:0003676
	Dod09g1022	177	MobiDBLite	consensus disorder prediction	109	177	-	-
	Dod09g1022	177	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Dod09g1022	177	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	173	-	-
	Dod09g1022	177	Gene3D	-	1	93	IPR012677	-
	Dod09g1022	177	Pfam	Zinc knuckle	94	109	IPR001878	GO:0003676\|GO:0008270
	Dod09g1022	177	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Dod09g1022	177	ProSiteProfiles	Zinc finger CCHC-type profile.	94	109	IPR001878	GO:0003676\|GO:0008270
	Dod09g1022	177	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Dod09g1022	177	SMART	c2hcfinal6	94	110	IPR001878	GO:0003676\|GO:0008270
	Dod09g1022	177	MobiDBLite	consensus disorder prediction	66	95	-	-
	Dod09g1022	177	CDD	RRM_SRSF3_like	3	71	-	-
	Dod09g1022	177	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1	2	173	-	-
	Dod09g1022	177	SUPERFAMILY	Retrovirus zinc finger-like domains	85	111	IPR036875	GO:0003676\|GO:0008270
	Dod09g1022	177	Gene3D	-	94	147	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g1022	Dod-Chr9	30649789	30653977	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g1022	4	84	Eukaryotic Initiation Factors Gene Family	AT1G71770	34.483	1.59e-07	48.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g1022	K12896		-	gmx:100796961	216.468