Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1011 ATGGATGAATATGCTAGTAAAAGAGCCATTGATGGGGTGGTAGTCCCTAGAAAGGGGATGAACCATTTGTTCAGAGATACTGCTAATACTAGAGATCAAAATGGTCAAGTATGCAGTCGTGTTGGTTGCAGTAGCAAAGTTAACTCTCCTAAAGGTGCTCAAATTAGATCCTCTGAGAAGGGTAAATCTTTGAGATCTTCTATTCGATATGCTCCCAGTGGCAAGGAAGCAATTGGGACTTCCTCCAGAACTTTCTCAGGCAACACTAACCCAGGAAAACCCATTATAAAGCCTCGGAAGACATTGTCCTCTCGATTAGAGACAGATTCATCTGAAACTGGTAGTGTACAGGATGAACCCGAGGTTTCAAATCTTGTCCCTCCACCTGAAAATAGTCAGAGAGGGCTTCAAGCAGAAGTGGAAAATGCGGAGTCTAGTAATGTCATGCAGATGGAAGTAGGGAGTTCTAGTGTAGCATCTAACACAAGGTCTCAGAGGAACTTTCATCCAAAGCCTGGATTGCGTGGTCAAGAAATTAGAAGCACTGGTCCAATGACACGGGCCGCTACCACTAGGGATGGATTGAGGAACCTCAGATGCAACTCTATATCTGATGTCATCCCTGCTGGCTGTTCACAATCAGATTCAACTCTTAACAAAAGAAAGGTTATGATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCCACTGCTAGAGGAAAGAAGGTGAGTGGGTCTTCATTAGAAGGAGGGAATTCTGGTTCCAGAAACGGTATATCTATCTCTGATTCAAGAAGGTCTAGAAATACTCCTCCTTGCAGGGACAGGCCAGACAGCAACACAACATCAGTTAGAACGAGAAGACCAATTAGTGGTAATGCAAGGGGAAGGCTTTCTAGCCAAGGAAATGCTAATCCTGTGGTTTCCAATGAGTCCCTTGTCATGATACCTCCTTTGCCTCATTTTGGTAGTTTTAATGCTTCTGGTGTATCCCATGATTCTTCTGTGGGGGCTACTTTAAGTCGTCTGAGCACTTATAGTAGACCTGGTTCCAGTGGCGAGGAACTGTATGGTGTTATGCCTGTGTCTCCTACAGAATACAGCATCACTCATTCTCTAATGAATCGGGATAGCTTCCGACGACGCTACAACATGGATGGTATTGCAGAGGTGTTTTTGACACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCTCTTACTGGAGTCCAACTTTCTCCTTAATGGACTGAGCTTCTATGATCAGCATAGAGACATGCGGTTGGACATTGATAACATGTCGTATGAGGAACTTTTAGCTCTGGAAGAGAGGATGGGCACCGTGAGCACAGCTGTATCAGAGGAAGCACTATCTGAATGCCTAAATAGAAGTTTCTATCAATCTTCACCATCAGATGATGCAGCCGAAAGTTGCGATGGGGATGGGGATAAGGATGATGCCAAATGCAGCATCTGCCAGGAGGAATATGTGGCTGCAGATGAAGTGGGGAGCCTACAATGCGAGCACATGTATCACGTGGCTTGCATTCAGCAGTGGCTGCGGCTGAAGAACTGGTGCCCTATTTGCAAAGTATCAGTGGCACAGCCAAAGCCATCTTCTTCTTCATCATCCCATTGA 1650 0.4473 MDEYASKRAIDGVVVPRKGMNHLFRDTANTRDQNGQVCSRVGCSSKVNSPKGAQIRSSEKGKSLRSSIRYAPSGKEAIGTSSRTFSGNTNPGKPIIKPRKTLSSRLETDSSETGSVQDEPEVSNLVPPPENSQRGLQAEVENAESSNVMQMEVGSSSVASNTRSQRNFHPKPGLRGQEIRSTGPMTRAATTRDGLRNLRCNSISDVIPAGCSQSDSTLNKRKVMIKKRNCEGESSSTARGKKVSGSSLEGGNSGSRNGISISDSRRSRNTPPCRDRPDSNTTSVRTRRPISGNARGRLSSQGNANPVVSNESLVMIPPLPHFGSFNASGVSHDSSVGATLSRLSTYSRPGSSGEELYGVMPVSPTEYSITHSLMNRDSFRRRYNMDGIAEVFLTLERIEQDVELTHEQILLLESNFLLNGLSFYDQHRDMRLDIDNMSYEELLALEERMGTVSTAVSEEALSECLNRSFYQSSPSDDAAESCDGDGDKDDAKCSICQEEYVAADEVGSLQCEHMYHVACIQQWLRLKNWCPICKVSVAQPKPSSSSSSH* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1011 549 MobiDBLite consensus disorder prediction 45 138 - -
Dod09g1011 549 ProSiteProfiles Zinc finger RING-type profile. 493 534 IPR001841 -
Dod09g1011 549 SUPERFAMILY RING/U-box 488 540 - -
Dod09g1011 549 Coils Coil 395 415 - -
Dod09g1011 549 MobiDBLite consensus disorder prediction 77 91 - -
Dod09g1011 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 540 IPR013083 -
Dod09g1011 549 MobiDBLite consensus disorder prediction 107 138 - -
Dod09g1011 549 MobiDBLite consensus disorder prediction 274 305 - -
Dod09g1011 549 SMART ring_2 493 533 IPR001841 -
Dod09g1011 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 538 IPR045191 GO:0061630
Dod09g1011 549 MobiDBLite consensus disorder prediction 229 305 - -
Dod09g1011 549 Pfam Ring finger domain 492 534 IPR001841 -
Dod09g1011 549 MobiDBLite consensus disorder prediction 45 61 - -
Dod09g1011 549 MobiDBLite consensus disorder prediction 236 267 - -
Dod09g1011 549 MobiDBLite consensus disorder prediction 154 168 - -
Dod09g1011 549 MobiDBLite consensus disorder prediction 154 193 - -
Dod09g1011 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1011 Dod-Chr9 30494961 30497976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1011 388 535 C3H Transcription Factor Family AT2G15530 41.216 3.81e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1011 - - gmx:100787213 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1011 09 30494961 30497976 Dod09g1011 09 30494961 30497976 ECH
Dod08g1585 08 36698960 36703491 Dod09g1011 09 30494961 30497976 PCT