Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0978 ATGGGAGAAGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTTGAGTGTAATGACATGAGGCATGTGACTGAGAAAGATTTGTACAATGTACCATCAAATGCAGAGCACATGTGTGGAGAAGAATCAAGTCAATCAACAGAACATGAAAAGATCAATGACTTGCGAGAGAGGGGATACATGGAACATGGATGCCAACATTACAGAAGAAGATGCCGCATTAGGGCCCCCTGCTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCTAAAAATGATATCAGCATTGATCAGAAGCATAGACATGACATTCCCCGCCATCAAGTCAAACAGGTGATATGTTCACTTTGTGGGACTGAACAAGAGGTTCAGCAAGACTGTATCAATTGTGGAGTTTGTATGGGCAAGTACTTCTGTGAGACATGCAAGCTCTTTGATGATGATGTATCTAAGCAGCAATATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGCGAAAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTACACAACACTGCTGAAAAACAGTCACCCCTGTGTGGAAGGAGCAATGCATCACGATTGCCCCATTTGTTTTGAGTATTTGTTTGAATCCATGAATGATGTCACTGTTTTGCCCTGTGGACATACAATCCACAAAAGCTGCCTGCAGGAAATGAGGGAACATTTCCAGTATACTTGCCCTCTCTGCTCGAAGTCCATTTGTGATATGTCGAAAGTCTGGGAGAAATTGGACTTGGAGATAGCTGCTACACCAATGCCAGAAACATTTCAAAGTAAAATGGTTTGGATTCTTTGCAATGATTGTGGTAGAACCTCTCACGTGAAGTACCATCTTGTTGCTCAGAAGTGCATGAACTGCAAATCATACAACACACGACAAACAAGAGGCTGA 930 0.4312 MGEVAVMHSEPLQFECNDMRHVTEKDLYNVPSNAEHMCGEESSQSTEHEKINDLRERGYMEHGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDISIDQKHRHDIPRHQVKQVICSLCGTEQEVQQDCINCGVCMGKYFCETCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCYKCGCCYTTLLKNSHPCVEGAMHHDCPICFEYLFESMNDVTVLPCGHTIHKSCLQEMREHFQYTCPLCSKSICDMSKVWEKLDLEIAATPMPETFQSKMVWILCNDCGRTSHVKYHLVAQKCMNCKSYNTRQTRG* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0978 309 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 24 309 - -
Dod09g0978 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 309 - -
Dod09g0978 309 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Dod09g0978 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Dod09g0978 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Dod09g0978 309 SUPERFAMILY RING/U-box 199 246 - -
Dod09g0978 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Dod09g0978 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 245 IPR013083 -
Dod09g0978 309 SMART ring_2 200 242 IPR001841 -
Dod09g0978 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Dod09g0978 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Dod09g0978 309 Gene3D - 271 309 - -
Dod09g0978 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Dod09g0978 309 Pfam Ring finger domain 199 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0978 Dod-Chr9 30081220 30084487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0978 62 309 C2H2 Transcription Factor Family AT3G18290 39.764 6.19e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0978 K10144 - gmx:100812023 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0978 09 30081220 30084487 Dod09g0978 09 30081220 30084487 ECH
Dod08g1626 08 38124906 38130473 Dod09g0978 09 30081220 30084487 PCT
Dod09g0978 09 30081220 30084487 Dod08g1600 08 37221683 37223836 PCT