Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0975 ATGGCAAGTGTGAAGAAAGAAGATGCTAGAATTGAAAAAGTTATTCGTGGTCTTTTGAAACTTCCTGGAAATAGAAGATGCATCAACTGCAATCTCTTGGGACCACAATATGTGTGCACTACTTTCTCCACGTTTGTCTGCACAAATTGCAGTGGAATACATCGAGAGTTTACTCATAGAGTAAAATCGGTATCCATGGCTAAATTTACTTCAGATGAAGTTGAAGCTCTTCAAGCAGGTGGCAATGAGAGAGCCAAGCAGATTTATTTCAAAGAATGTAACCCTCTGCGGAATTCTTACCCTGATACCAACAATATAAACAAATTGCGGGATTTCATCAGGCATGTATATGTGGACAAAAGATTTACCGGTGAAATGAGTTCCGTGGATCTTCCTAAGCTTGGATTGATTGAAAAGGAGGAGCCCTACCAAAGTAGGAAGATTAATTCATTTCATATTGAGCCCAAAAGTTCAGATAATGAAGATAGACTTCAAAGACATTCTAGTGAAAAATATGATCCTAGTTTAAGAAGTGAAGACAAGAATATTAGATTATACTATGATGAAAGAAGCCACCCAAGATATGCTCAAAACTACACAAGGCACGTCAGCCTTGTCAGAAAGCCTGCAAAATTTGAGGTTGTTGATGACAGGATCAAAGATGATGAGTTAAGAAACCGCAAACTTTCAAATTTGGAATCAAAGCTAAGACAACTTCAACTTGGCAGCCAGAAGATTGTAGTTGAATCACAATCACCTGTTATGCACTCTTCGAAACAAGTATTAGAAGCTCCATCTCTAAAAACCTCCAATGCTGCTACTGAGCCTAAAACACAGCCTATATCACATCCAAGTGAAGACAACTGGGCCACATTTGATGACTATTATACATTGGACAATGCTGCAAAAACCTCAAACTCAAATACCTTGATATCTTCCATAACAGAGAAAACACCTCAAGCAACAACACATGCAAATTCTTTAGATCTTTTACTTTTTGAATTATCAAGCCCATTGACTACAACAAGAGGTGGCATGTCTGAGTCTCAAGTCTCAACTGGTGACAATAATCCAACAACTGCAACCGTAGGAAATGCAAGTACTAGTGGGGATTTGCAGCAGTTGCCATCCACCTCAATAAGGCAGACAACTGCATCACCCAAGAATAGCCATGCCTTGTCAATTACACCAACCCCTACCAATGAGATGGAACAACCTTCTCATAAAGTGCTTTCACAGGCCGAAATTTTTTATAGAGAAGACTCTAATGAAGTTTTAGATGGGCAAAAATTCTCAAGCATGCAATTTCCTCCTAGTGTATCAGTAGGTAGTAGCTCTACAACACAACAACCAAGTACACCACCTATCACACTTGCAGCATCAAATGACATGTCATCAGATGTTCTTAATTCACATGACTCACCCAATGCTTTTGCTGAATTATCTCCTCAGACCACCTCAAAACCTGCTCAAAACACCAAACCTTATGTTGGCTCCCATCCTAGTGCAGTGCAAACCAAGTCAAGTGGAAGAAAGGAGCTTCCAGCGGACCTTTTCACTACAAGCTACTTACCTAGCCCTACACCAGTTGGAGGTTGGCATAATGTTCAACCTCATAGCATAGGATATGGCTTGCAATATTATCCTGATTCAATGCCAACCTCAGTATTTCCCATCGCAATCATGCCCAAAAATCCATTTGAAGAAACTGAAGCAAGAACTTTAGCCCACGCCTCATCATTTCCAACTCTGGCATCTTTGCATGGTGCACTACCTTCTGTATCACCCAGAACAGGATTAATGCATGCTGCAAGTTTTGGATCTTTAGGAATGATGCCTCAATCCCCAAGTTATGGATCTCCTGTTCATCCACAAGCTACCTTCAGTTTCGGATTTCCCAATGGTGCATACTTTGGGCAAGTTGATAATAACATGCAACCTCCAAGGCCTGAACGAGTTGCCAGCTTCAATAATGACAGAAATATTTTTGGATCCTTGGGCACCATGCAGCCTTCAGGTGGAGAATACAAGACACCCAGTACTCCAAATTCTTTTTCTAAAAAGGGAGGAAACCCATTTAGAGGTGACTAA 2091 0.4055 MASVKKEDARIEKVIRGLLKLPGNRRCINCNLLGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFTSDEVEALQAGGNERAKQIYFKECNPLRNSYPDTNNINKLRDFIRHVYVDKRFTGEMSSVDLPKLGLIEKEEPYQSRKINSFHIEPKSSDNEDRLQRHSSEKYDPSLRSEDKNIRLYYDERSHPRYAQNYTRHVSLVRKPAKFEVVDDRIKDDELRNRKLSNLESKLRQLQLGSQKIVVESQSPVMHSSKQVLEAPSLKTSNAATEPKTQPISHPSEDNWATFDDYYTLDNAAKTSNSNTLISSITEKTPQATTHANSLDLLLFELSSPLTTTRGGMSESQVSTGDNNPTTATVGNASTSGDLQQLPSTSIRQTTASPKNSHALSITPTPTNEMEQPSHKVLSQAEIFYREDSNEVLDGQKFSSMQFPPSVSVGSSSTTQQPSTPPITLAASNDMSSDVLNSHDSPNAFAELSPQTTSKPAQNTKPYVGSHPSAVQTKSSGRKELPADLFTTSYLPSPTPVGGWHNVQPHSIGYGLQYYPDSMPTSVFPIAIMPKNPFEETEARTLAHASSFPTLASLHGALPSVSPRTGLMHAASFGSLGMMPQSPSYGSPVHPQATFSFGFPNGAYFGQVDNNMQPPRPERVASFNNDRNIFGSLGTMQPSGGEYKTPSTPNSFSKKGGNPFRGD* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0975 696 MobiDBLite consensus disorder prediction 661 688 - -
Dod09g0975 696 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Dod09g0975 696 MobiDBLite consensus disorder prediction 436 512 - -
Dod09g0975 696 MobiDBLite consensus disorder prediction 250 286 - -
Dod09g0975 696 CDD ArfGap_AGFG 12 122 - -
Dod09g0975 696 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Dod09g0975 696 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Dod09g0975 696 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Dod09g0975 696 MobiDBLite consensus disorder prediction 154 177 - -
Dod09g0975 696 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Dod09g0975 696 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Dod09g0975 696 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Dod09g0975 696 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 311 - -
Dod09g0975 696 PANTHER ARFGAP/RECO-RELATED 298 693 IPR044820 GO:0005096
Dod09g0975 696 PANTHER ARFGAP/RECO-RELATED 1 311 IPR044820 GO:0005096
Dod09g0975 696 MobiDBLite consensus disorder prediction 661 696 - -
Dod09g0975 696 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 298 693 - -
Dod09g0975 696 MobiDBLite consensus disorder prediction 436 509 - -
Dod09g0975 696 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Dod09g0975 696 MobiDBLite consensus disorder prediction 341 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0975 Dod-Chr9 30030786 30035957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0975 10 122 C2H2 Transcription Factor Family AT3G07940 35.043 7.00e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0975 - - ahf:112707813 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0975 09 30030786 30035957 Dod09g0975 09 30030786 30035957 ECH
Dod02g3607 02 73958486 73966036 Dod09g0975 09 30030786 30035957 ECH